View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11621_low_21 (Length: 334)

Name: NF11621_low_21
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11621_low_21
NF11621_low_21
[»] chr4 (10 HSPs)
chr4 (117-326)||(51112043-51112252)
chr4 (25-207)||(51111798-51111980)
chr4 (186-277)||(51112253-51112344)
chr4 (189-275)||(51111995-51112081)
chr4 (221-300)||(51112234-51112313)
chr4 (237-313)||(51111989-51112065)
chr4 (101-170)||(51112453-51112522)
chr4 (117-223)||(51112304-51112410)
chr4 (222-283)||(51111875-51111936)
chr4 (185-277)||(51112165-51112257)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 117 - 326
Target Start/End: Original strand, 51112043 - 51112252
Alignment:
Q  117 gcagcatcacctgcatagtctttagacttgtatgctgcagcattggcatattctcttgtcttttctgtagcatcacccgcataatctttggtcttgtgtg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  51112043 gcagcatcacctgcatagtctttagacttgtatgctgcagcattggcatattctcttgtcttttctgtagcatcacccgcataatctttggtcttgtatg 51112142  T
Q  217 ctgcatctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatctttggccttctgtgcagcatcacttccataatctttggt 316  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  51112143 ctgcatctttggtcttctcggcagcatcaccagcatagtctttagtcttgtatgctgcatcttttgccttctgtgcagcatcacttccataatctttggt 51112242  T
Q  317 cttctctgct 326  Q
    ||||||||||    
T  51112243 cttctctgct 51112252  T

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Target: chr4; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 25 - 207
Target Start/End: Original strand, 51111798 - 51111980
Alignment:
Q  25 tatttttggttttctgagcagtatcagctccatactttgctgtcttctgagtggtgtcattggcatattcagaagcctctttggttttttgagcagcatc 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51111798 tatttttggttttctgagcagtatcagctccatactttgctgtcttctgagtggtgtcattggcatattcagaagcctctttggttttttgagcagcatc 51111897  T
Q  125 acctgcatagtctttagacttgtatgctgcagcattggcatattctcttgtcttttctgtagcatcacccgcataatctttgg 207  Q
    |||||||||||||||||| |||||||||||| |||||||||| ||||| || || |  | ||||||||| |||||||||||||    
T  51111898 acctgcatagtctttagatttgtatgctgcatcattggcatactctctagtattgtgagcagcatcacctgcataatctttgg 51111980  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 186 - 277
Target Start/End: Original strand, 51112253 - 51112344
Alignment:
Q  186 gcatcacccgcataatctttggtcttgtgtgctgcatctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatc 277  Q
    |||||||| ||||||||||||||||||| |||||||||||||| | |||  ||||||||||||||||| ||||||| |||||||||||||||    
T  51112253 gcatcacctgcataatctttggtcttgtatgctgcatctttggccatctgtgcagcatcaccagcatactctttagacttgtatgctgcatc 51112344  T

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Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 189 - 275
Target Start/End: Original strand, 51111995 - 51112081
Alignment:
Q  189 tcacccgcataatctttggtcttgtgtgctgcatctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgca 275  Q
    ||||| ||||| ||||||||||| | ||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||    
T  51111995 tcaccagcatagtctttggtcttatatgctgcatctttggtcttctctgcagcatcacctgcatagtctttagacttgtatgctgca 51112081  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 51112234 - 51112313
Alignment:
Q  221 atctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatctttggccttctgtgcagcatcac 300  Q
    ||||||||||||||| || |||||||| ||||| ||||| |||||||||||||||||||||||| |||||||||||||||    
T  51112234 atctttggtcttctctgctgcatcacctgcataatctttggtcttgtatgctgcatctttggccatctgtgcagcatcac 51112313  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 313
Target Start/End: Original strand, 51111989 - 51112065
Alignment:
Q  237 gcagcatcaccagcatagtctttagtcttgtatgctgcatctttggccttctgtgcagcatcacttccataatcttt 313  Q
    ||||| ||||||||||||||||| ||||| |||||||||||||||| ||||| ||||||||||| | |||| |||||    
T  51111989 gcagcttcaccagcatagtctttggtcttatatgctgcatctttggtcttctctgcagcatcacctgcatagtcttt 51112065  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 101 - 170
Target Start/End: Original strand, 51112453 - 51112522
Alignment:
Q  101 ctctttggttttttgagcagcatcacctgcatagtctttagacttgtatgctgcagcattggcatattct 170  Q
    ||||||||||||||| ||||||||||||||||| ||||| |||||||  |||||| || |||||||||||    
T  51112453 ctctttggttttttgtgcagcatcacctgcatactctttggacttgtgcgctgcaccagtggcatattct 51112522  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 223
Target Start/End: Original strand, 51112304 - 51112410
Alignment:
Q  117 gcagcatcacctgcatagtctttagacttgtatgctgcagcattggcatattctcttgtcttttctgtagcatcacccgcataatctttggtcttgtgtg 216  Q
    ||||||||||| ||||| ||||||||||||||||||||| || | ||||| ||| |  |||| |  |||||| |||| ||||| |||||||| || ||||    
T  51112304 gcagcatcaccagcatactctttagacttgtatgctgcatcagttgcatactctttgctcttctgagtagcaccaccagcatagtctttggttttctgtg 51112403  T
Q  217 ctgcatc 223  Q
    | |||||    
T  51112404 cagcatc 51112410  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 51111875 - 51111936
Alignment:
Q  222 tctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatctttggc 283  Q
    |||||||| || | |||||||||||| |||||||||||||  |||||||||||||| |||||    
T  51111875 tctttggttttttgagcagcatcacctgcatagtctttagatttgtatgctgcatcattggc 51111936  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 277
Target Start/End: Original strand, 51112165 - 51112257
Alignment:
Q  185 agcatcacccgcataatctttggtcttgtgtgctgcatctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatc 277  Q
    ||||||||| ||||| ||||| ||||||| |||||||||||| | |||||  ||||||||||   |||| ||||| ||||| | |||||||||    
T  51112165 agcatcaccagcatagtctttagtcttgtatgctgcatcttttgccttctgtgcagcatcacttccataatctttggtcttctctgctgcatc 51112257  T

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