View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11621_low_24 (Length: 285)
Name: NF11621_low_24
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11621_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 6927659 - 6927386
Alignment:
| Q |
1 |
ttatacaacaattacttttgttaaacctaaatctctcattcccttttcatgcagaaatagttgatatgtg-----tttgcaaatattactgttataagag |
95 |
Q |
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| T |
6927659 |
ttatacaacaattacttttgttaaacctaaatctctcattcccttttcatgcagacgtagttgatatataaagcttttgcaaatattactgttataagag |
6927560 |
T |
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| Q |
96 |
gttttcttccagacttgtccatcaaaatggctcccaacaaggtaaacggaacctattattcaatgtaacaaataaagtttagacaaaataatttagttat |
195 |
Q |
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| T |
6927559 |
gttttcttccagacttgtccatcaaaatggctcccaacaaggtaaacggaacctattattcaatgtaacaaataaagtttagacaaaataatttagttat |
6927460 |
T |
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| Q |
196 |
atggttagtttcctgagaaattattaaagggatcaagtacctgtatacatgcataagctatggtaccagctttt |
269 |
Q |
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| T |
6927459 |
atggttagtttcctgagaaattattaaagggatcaagtacctgtatacatgcataagctatggtaccagctttt |
6927386 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 49133760 - 49133708
Alignment:
| Q |
80 |
attactgttataagaggttttcttccagacttgtccatcaaaatggctcccaa |
132 |
Q |
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| T |
49133760 |
attaccgttataagtggtcttcttccagatttatccatcaaaatggctcccaa |
49133708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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