View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11621_low_26 (Length: 276)

Name: NF11621_low_26
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11621_low_26
NF11621_low_26
[»] chr7 (29 HSPs)
chr7 (1-259)||(10280426-10280684)
chr7 (2-154)||(16437348-16437500)
chr7 (2-124)||(14927221-14927342)
chr7 (2-124)||(15350687-15350808)
chr7 (2-154)||(29545575-29545727)
chr7 (2-154)||(20992116-20992268)
chr7 (2-154)||(12326384-12326537)
chr7 (175-229)||(14927401-14927455)
chr7 (175-229)||(15350867-15350921)
chr7 (171-254)||(10661614-10661697)
chr7 (184-259)||(26132274-26132349)
chr7 (181-259)||(21261192-21261270)
chr7 (2-87)||(6045893-6045977)
chr7 (183-256)||(23960789-23960862)
chr7 (183-259)||(23082095-23082171)
chr7 (186-229)||(12326579-12326622)
chr7 (175-254)||(20924431-20924510)
chr7 (171-229)||(20992295-20992353)
chr7 (9-40)||(7586079-7586110)
chr7 (2-57)||(24902676-24902730)
chr7 (171-229)||(16207230-16207288)
chr7 (187-229)||(19295519-19295561)
chr7 (183-229)||(24902870-24902915)
chr7 (184-232)||(645897-645945)
chr7 (185-229)||(9567656-9567700)
chr7 (50-154)||(15506851-15506955)
chr7 (2-42)||(21261004-21261044)
chr7 (2-42)||(23082321-23082361)
chr7 (2-34)||(42636780-42636812)
[»] chr5 (23 HSPs)
chr5 (2-154)||(18221682-18221834)
chr5 (2-154)||(30605125-30605278)
chr5 (2-143)||(26328660-26328801)
chr5 (2-154)||(26037351-26037503)
chr5 (2-154)||(22082125-22082277)
chr5 (2-154)||(38405934-38406086)
chr5 (3-82)||(23624449-23624524)
chr5 (2-154)||(23419991-23420143)
chr5 (178-229)||(23624600-23624651)
chr5 (186-259)||(22082010-22082083)
chr5 (184-229)||(30605040-30605085)
chr5 (184-234)||(22251385-22251435)
chr5 (172-259)||(20714062-20714149)
chr5 (178-229)||(38406120-38406171)
chr5 (187-229)||(23757606-23757648)
chr5 (187-229)||(23823062-23823104)
chr5 (184-229)||(26037542-26037587)
chr5 (185-229)||(22183667-22183711)
chr5 (2-70)||(22245877-22245945)
chr5 (50-154)||(23757691-23757795)
chr5 (50-154)||(23823147-23823251)
chr5 (2-70)||(25104978-25105046)
chr5 (2-70)||(25164071-25164139)
[»] chr6 (35 HSPs)
chr6 (2-154)||(23882132-23882284)
chr6 (2-154)||(29253116-29253268)
chr6 (1-154)||(15930282-15930435)
chr6 (2-153)||(12039143-12039294)
chr6 (2-154)||(17863908-17864060)
chr6 (2-154)||(20465328-20465480)
chr6 (2-154)||(20653642-20653794)
chr6 (2-154)||(25805981-25806133)
chr6 (172-251)||(19598434-19598513)
chr6 (174-259)||(15930167-15930252)
chr6 (172-229)||(23882047-23882104)
chr6 (2-154)||(13869836-13869988)
chr6 (184-259)||(12385177-12385252)
chr6 (171-229)||(13196076-13196134)
chr6 (2-154)||(17235167-17235319)
chr6 (181-229)||(34639555-34639603)
chr6 (187-229)||(25806176-25806218)
chr6 (184-229)||(17235359-17235404)
chr6 (171-228)||(17868275-17868332)
chr6 (171-228)||(17878058-17878115)
chr6 (184-229)||(19077908-19077953)
chr6 (184-229)||(23879650-23879695)
chr6 (181-229)||(11961231-11961279)
chr6 (50-154)||(12028577-12028681)
chr6 (2-154)||(19077716-19077868)
chr6 (181-229)||(26964902-26964950)
chr6 (2-97)||(17876245-17876340)
chr6 (178-220)||(29253039-29253081)
chr6 (184-229)||(8465016-8465061)
chr6 (184-229)||(19894017-19894062)
chr6 (184-229)||(21722757-21722802)
chr6 (2-35)||(28623132-28623165)
chr6 (184-229)||(33666556-33666601)
chr6 (50-154)||(20989224-20989328)
chr6 (2-154)||(33666365-33666516)
[»] scaffold0003 (1 HSPs)
scaffold0003 (2-154)||(26978-27130)
[»] chr1 (21 HSPs)
chr1 (2-144)||(23477379-23477521)
chr1 (7-154)||(15803571-15803718)
chr1 (2-154)||(11667337-11667489)
chr1 (2-154)||(24986556-24986708)
chr1 (2-145)||(20840707-20840850)
chr1 (60-154)||(17850861-17850955)
chr1 (184-259)||(25349548-25349623)
chr1 (181-259)||(10339478-10339556)
chr1 (184-229)||(12753825-12753870)
chr1 (184-229)||(20200438-20200483)
chr1 (184-229)||(20840613-20840658)
chr1 (184-229)||(26971747-26971792)
chr1 (181-229)||(8282682-8282730)
chr1 (2-42)||(12753633-12753673)
chr1 (184-228)||(22891151-22891195)
chr1 (107-154)||(4246716-4246763)
chr1 (171-229)||(1626325-1626383)
chr1 (1-154)||(20200523-20200674)
chr1 (183-259)||(17850746-17850822)
chr1 (185-229)||(22347972-22348016)
chr1 (185-229)||(51471440-51471484)
[»] chr3 (23 HSPs)
chr3 (2-145)||(21253440-21253583)
chr3 (2-154)||(28051711-28051867)
chr3 (2-154)||(296014-296166)
chr3 (2-154)||(18063641-18063793)
chr3 (174-259)||(286219-286304)
chr3 (172-228)||(21253347-21253403)
chr3 (50-154)||(13515053-13515157)
chr3 (181-229)||(25020158-25020206)
chr3 (187-254)||(6578873-6578940)
chr3 (182-229)||(18063556-18063603)
chr3 (171-229)||(17042109-17042167)
chr3 (172-229)||(3551828-3551885)
chr3 (181-229)||(214444-214492)
chr3 (185-229)||(8225849-8225893)
chr3 (2-42)||(17042300-17042340)
chr3 (185-229)||(18477860-18477904)
chr3 (186-229)||(13514967-13515010)
chr3 (187-229)||(18482722-18482764)
chr3 (172-229)||(979730-979787)
chr3 (2-70)||(7028589-7028657)
chr3 (7-35)||(11656881-11656909)
chr3 (2-154)||(13791250-13791402)
chr3 (2-154)||(18548221-18548373)
[»] chr4 (21 HSPs)
chr4 (2-139)||(15699785-15699922)
chr4 (3-154)||(19183118-19183269)
chr4 (2-154)||(15161918-15162070)
chr4 (185-229)||(10718241-10718285)
chr4 (185-229)||(10932010-10932054)
chr4 (171-229)||(9069696-9069754)
chr4 (4-154)||(16384465-16384615)
chr4 (184-229)||(18601009-18601054)
chr4 (185-230)||(49975014-49975059)
chr4 (185-229)||(10683013-10683057)
chr4 (185-229)||(10896653-10896697)
chr4 (178-229)||(15699685-15699736)
chr4 (184-254)||(15623201-15623271)
chr4 (183-229)||(32862408-32862454)
chr4 (188-229)||(10723056-10723097)
chr4 (188-229)||(10936825-10936866)
chr4 (184-229)||(16384655-16384700)
chr4 (186-259)||(19183001-19183074)
chr4 (172-229)||(41786186-41786243)
chr4 (185-229)||(10197597-10197641)
chr4 (2-42)||(33744043-33744083)
[»] chr2 (10 HSPs)
chr2 (10-259)||(15328906-15329160)
chr2 (2-154)||(21530951-21531103)
chr2 (172-259)||(21249517-21249604)
chr2 (185-229)||(27108209-27108253)
chr2 (172-259)||(21531131-21531218)
chr2 (184-229)||(24789508-24789553)
chr2 (185-229)||(24311202-24311246)
chr2 (185-229)||(27111798-27111842)
chr2 (185-229)||(36397839-36397883)
chr2 (1-154)||(23759196-23759349)
[»] chr8 (14 HSPs)
chr8 (2-88)||(18622247-18622333)
chr8 (4-154)||(26536861-26537012)
chr8 (3-154)||(33977633-33977784)
chr8 (2-154)||(27924887-27925039)
chr8 (29-154)||(33962333-33962458)
chr8 (181-259)||(18622423-18622501)
chr8 (183-231)||(20254224-20254272)
chr8 (2-154)||(45136684-45136836)
chr8 (2-154)||(22485706-22485858)
chr8 (50-154)||(23540841-23540945)
chr8 (184-229)||(27924802-27924847)
chr8 (2-42)||(9997071-9997111)
chr8 (184-232)||(22485898-22485946)
chr8 (187-258)||(26537055-26537127)
[»] scaffold0213 (1 HSPs)
scaffold0213 (2-154)||(8013-8166)
[»] scaffold0226 (5 HSPs)
scaffold0226 (2-154)||(6972-7124)
scaffold0226 (3-154)||(17559-17710)
scaffold0226 (3-154)||(26953-27104)
scaffold0226 (184-229)||(17474-17519)
scaffold0226 (184-229)||(26868-26913)
[»] scaffold0190 (2 HSPs)
scaffold0190 (13-154)||(16055-16196)
scaffold0190 (184-229)||(15970-16015)
[»] scaffold0259 (1 HSPs)
scaffold0259 (3-154)||(16760-16911)
[»] scaffold0129 (1 HSPs)
scaffold0129 (184-229)||(16270-16315)
[»] scaffold0059 (2 HSPs)
scaffold0059 (184-229)||(47740-47785)
scaffold0059 (2-70)||(47910-47978)
[»] scaffold0088 (2 HSPs)
scaffold0088 (184-232)||(37355-37403)
scaffold0088 (5-154)||(37166-37315)
[»] scaffold0069 (1 HSPs)
scaffold0069 (50-150)||(9295-9395)
[»] scaffold1001 (2 HSPs)
scaffold1001 (171-229)||(715-772)
scaffold1001 (2-42)||(536-576)
[»] scaffold0185 (1 HSPs)
scaffold0185 (184-229)||(1717-1762)
[»] scaffold0103 (2 HSPs)
scaffold0103 (184-229)||(25027-25072)
scaffold0103 (2-70)||(25196-25264)
[»] scaffold0006 (1 HSPs)
scaffold0006 (184-229)||(88511-88556)
[»] scaffold0520 (2 HSPs)
scaffold0520 (185-229)||(5733-5777)
scaffold0520 (185-229)||(11988-12032)
[»] scaffold0480 (1 HSPs)
scaffold0480 (185-229)||(11946-11990)
[»] scaffold0064 (1 HSPs)
scaffold0064 (185-229)||(45317-45361)
[»] scaffold0035 (1 HSPs)
scaffold0035 (181-229)||(38067-38115)
[»] scaffold0034 (1 HSPs)
scaffold0034 (185-229)||(50259-50303)


Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 10280426 - 10280684
Alignment:
Q  1 agaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10280426 agaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatatttcctaaaatataatcacaactttaggaatatgccacaactgat 10280525  T
Q  101 catataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcctaggtgcgcatactttttaggcatgatacaaggcacactgaaccgtg 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||    
T  10280526 catataaagatatgcgtgttgctttgtcaataagataaggaaatactgtttcctaggcgcacgtactttttaggcatgatacaaggcacactgaaccgtg 10280625  T
Q  201 gcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacatgttagaac 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10280626 gcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacatgttagaac 10280684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 16437348 - 16437500
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  16437348 gaaagtcctaaaatataggaacatctttaggaacgtccaaaacaacttcaaatatttcctaaaatataatcacaactttaggaatattccacaactgatc 16437447  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     |  ||||||||| | |||||||  || |||||||||||| |||  |||||||    
T  16437448 ctgcaaagatatgtgcgttgcttgatcaataagataaggacatatggtttcct 16437500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 14927221 - 14927342
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| || ||||||||||||| |||||||||||| |||||||||||     
T  14927221 gaaagtcctaaaatgtaggaacatctttaggagcgtccaatacagcttcaaatatttcct-aaatataatcacatctttaggaatattccacaactgatt 14927319  T
Q  102 atataaagatatgcgtgttgctt 124  Q
     | ||||||||||||||||||||    
T  14927320 ctgtaaagatatgcgtgttgctt 14927342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 15350687 - 15350808
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||| || ||||||||||||| |||||||||||| |||||||||||     
T  15350687 gaaagtcctaaaatgtaggaacatctttaggagcgtccaatacagcttcaaatatttcct-aaatataatcacatctttaggaatattccacaactgatt 15350785  T
Q  102 atataaagatatgcgtgttgctt 124  Q
     | ||||||||||||||||||||    
T  15350786 ctgtaaagatatgcgtgttgctt 15350808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 29545727 - 29545575
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||   ||||||||| |||||||||||  || ||||||||||||| |||||||||||     
T  29545727 gaaagtcctaaaatgtcggaacatctttaggatcgtccaaaacaataacaaatatttcctaaaatataaatactactttaggaatattccacaactgatt 29545628  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     | |||||||||||  |||||||  || |||||||| ||||||| ||||||||    
T  29545627 ctgtaaagatatgcacgttgcttgatcaataagatacggaaatattgtttcct 29545575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 20992116 - 20992268
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||| ||||||||||||||| ||| | |  |||   ||||||||| |||||||||||  || ||||||| ||||| | |||  ||||     
T  20992116 gaaagtcctaaaatgtcggaacatctttaggatcgttccacccaataacaaatatttcctaaaatataaatactactttagaaatattcaacagttgatt 20992215  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     | || ||||||||| ||||||| ||| |||||||||||||||| ||||||||    
T  20992216 ttgtatagatatgcgcgttgcttggtcaataagataaggaaatattgtttcct 20992268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 12326384 - 12326537
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaactt-caaatattttctaaaatataatcacaactttaggaatatgccacaactgat 100  Q
    |||||||||||||||| ||||||||||||||| |||    ||||| |  |||||||||||||||||||||  || ||||||| ||||| ||||| || ||    
T  12326384 gaaagtcctaaaatgtcggaacatctttaggatcgtttccaacaaataacaaatattttctaaaatataaatactactttagaaatattccacagctaat 12326483  T
Q  101 catataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
        || ||||||||| ||| ||| ||| |||||||||||||||| ||||||||    
T  12326484 tcggtatagatatgcgcgtttcttggtcaataagataaggaaatattgtttcct 12326537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 14927401 - 14927455
Alignment:
Q  175 catgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||    
T  14927401 catgatacaaggcacactaaaccgtgccaggatgttggaacatcgtatccaacat 14927455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 15350867 - 15350921
Alignment:
Q  175 catgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||    
T  15350867 catgatacaaggcacactaaaccgtgccaggatgttggaacatcgtatccaacat 15350921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 254
Target Start/End: Original strand, 10661614 - 10661697
Alignment:
Q  171 taggcatgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacatgtt 254  Q
    ||||||||| |  |||||||||||||||||  |||||||||||| |||||||||||||| || | || |||||| |||||||||    
T  10661614 taggcatgaaatcaggcacactgaaccgtgctaggatgttggaacatcgtatccaacatcttacataaatgcctaaaacatgtt 10661697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 26132349 - 26132274
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacatgttagaac 259  Q
    ||||||||||||||||| ||||||||||||| ||| |||||||||| || |  | |||||||||||||||| ||||    
T  26132349 aggcacactgaaccgtgccaggatgttggaacatcatatccaacatcttacagagatgcctgaaacatgttggaac 26132274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 21261192 - 21261270
Alignment:
Q  181 acaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacatgttagaac 259  Q
    |||||||||||||||||||| ||||||||||||| ||| |||||||||| || |  | |||||| ||||||||| ||||    
T  21261192 acaaggcacactgaaccgtgccaggatgttggaacatcatatccaacatcttacagaaatgcctaaaacatgttggaac 21261270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 6045893 - 6045977
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaata 87  Q
    ||||||||||| |||||||||||||||||||||| ||| |||||  | |||||||| |||||||||| |||||   ||||||||||    
T  6045893 gaaagtcctaatatgtaggaacatctttaggaacttcc-aaacatatccaaatattctctaaaatattatcactcttttaggaata 6045977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 23960789 - 23960862
Alignment:
Q  183 aaggcacactgaaccgtggcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacatgttag 256  Q
    ||||||||||||| |||| ||||||||||||| |||||||||||||| || |  | |||||| |||||||||||    
T  23960789 aaggcacactgaatcgtgccaggatgttggaacatcgtatccaacatcttacagaaatgcctaaaacatgttag 23960862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 23082171 - 23082095
Alignment:
Q  183 aaggcacactgaaccgtggcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacatgttagaac 259  Q
    |||||||||||||||||| ||||||||||||| ||| |||||||||| || |  | |||||| ||||||||| ||||    
T  23082171 aaggcacactgaaccgtgccaggatgttggaacatcatatccaacatcttacagaaatgcctaaaacatgttggaac 23082095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 12326579 - 12326622
Alignment:
Q  186 gcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  12326579 gcacactgaaccgtgccaggatgttggaacatcgtatccaacat 12326622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 20924510 - 20924431
Alignment:
Q  175 catgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacatgtt 254  Q
    ||||| ||||||||||||||| | || ||||||||||||| |||||||||||||| || |  | ||||||||| ||||||    
T  20924510 catgaaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgtt 20924431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 20992295 - 20992353
Alignment:
Q  171 taggcatgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||  | ||||||||||||||||| ||||||||||||| ||| ||||||||||    
T  20992295 taggcatgaacctaggcacactgaaccgtgccaggatgttggaacatcatatccaacat 20992353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 40
Target Start/End: Complemental strand, 7586110 - 7586079
Alignment:
Q  9 ctaaaatgtaggaacatctttaggaacgtcca 40  Q
    ||||||||||||||||||||||||||||||||    
T  7586110 ctaaaatgtaggaacatctttaggaacgtcca 7586079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 24902676 - 24902730
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatatt 57  Q
    ||||||| ||| |||||||||||||||||||||| ||| |||||| ||||||||||    
T  24902676 gaaagtcttaatatgtaggaacatctttaggaacttcc-aaacaaattcaaatatt 24902730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 16207288 - 16207230
Alignment:
Q  171 taggcatgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||  | |||||||||||||| || ||||||||||||| ||| ||||||||||    
T  16207288 taggcatgaacccaggcacactgaaccatgccaggatgttggaacatcatatccaacat 16207230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 19295519 - 19295561
Alignment:
Q  187 cacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||| || |||||||||| ||||||||||||||    
T  19295519 cacactgaaccgtgccaagatgttggaacatcgtatccaacat 19295561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 24902870 - 24902915
Alignment:
Q  183 aaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||||||| ||||||||||||| ||| ||||||||||    
T  24902870 aaggcacactgaaccgtg-caggatgttggaacatcatatccaacat 24902915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 645897 - 645945
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacatttt 232  Q
    ||||||||||||||||| |||||||||| |  |||| ||||||||||||    
T  645897 aggcacactgaaccgtgccaggatgttgaagcatcgcatccaacatttt 645945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 9567656 - 9567700
Alignment:
Q  185 ggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||| |||  |||||||||||| ||||||||||||||    
T  9567656 ggcacactgaactgtgctaggatgttggaacatcgtatccaacat 9567700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 15506851 - 15506955
Alignment:
Q  50 caaatattttctaaaatataatcacaactttaggaatatgccacaactgatcatataaagatatgcgtgttgctttgtcgataagataaggaaatactgt 149  Q
    ||||||||| |||||||||||     ||||||| ||||| |||||||||||  |  |||||||||||  || ||| ||| |||||||||| ||||| |||    
T  15506851 caaatatttcctaaaatataaaatatactttagaaatattccacaactgattcttcaaagatatgcgcatttcttggtcaataagataagaaaatattgt 15506950  T
Q  150 ttcct 154  Q
    |||||    
T  15506951 ttcct 15506955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 21261004 - 21261044
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaa 42  Q
    ||||||| ||| |||||||||||||||||||||| ||||||    
T  21261004 gaaagtcataatatgtaggaacatctttaggaacttccaaa 21261044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 23082361 - 23082321
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaa 42  Q
    ||||||| ||| |||||||||||||||||||||| ||||||    
T  23082361 gaaagtcgtaatatgtaggaacatctttaggaacttccaaa 23082321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 42636780 - 42636812
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaa 34  Q
    ||||||||||||| |||||||||||||||||||    
T  42636780 gaaagtcctaaaaagtaggaacatctttaggaa 42636812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 18221682 - 18221834
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  18221682 gaaagtcctaaaatgtaggaacatctttaggaatgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatattacacaactgatc 18221781  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     | |||||||||| |||||||||  || ||||||||||||||||| |||||||    
T  18221782 ctgtaaagatatgtgtgttgcttgatcaataagataaggaaatacggtttcct 18221834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 30605278 - 30605125
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtc-caaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgat 100  Q
    |||||||||| ||||| ||||||||||||||| |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||    
T  30605278 gaaagtcctataatgtcggaacatctttaggatcgtcacaaaacaacttcaaatatttcctaaaatataaacacaactttaggaatattccacaactgat 30605179  T
Q  101 catataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
      | |||||||||||| |||||||  || |||||||||||||||| ||||||||    
T  30605178 tctgtaaagatatgcgcgttgcttgatcaataagataaggaaatattgtttcct 30605125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 26328801 - 26328660
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    ||||||||||||||||  |||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||  ||||||||||     
T  26328801 gaaagtcctaaaatgtcagaacatctttaggagcgtccaaaacaacattaaatattttctaaaatataatcacaactttaggaatattacacaactgatt 26328702  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaa 143  Q
     |||||||||||| | ||| ||| ||| | ||||||||||||    
T  26328701 ctataaagatatgtgcgttacttggtcaacaagataaggaaa 26328660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 26037351 - 26037503
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||   ||||||||| |||||||||||  || ||||||||||||| |||||||||||     
T  26037351 gaaagtcctaaaatgtcggaacatctttaggatcgtccaaaacaataacaaatatttcctaaaatataaatactactttaggaatattccacaactgatt 26037450  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     | |||||||||||| ||||||| ||| ||| |||||||||||| ||||||||    
T  26037451 ttgtaaagatatgcgcgttgcttggtcaataggataaggaaatattgtttcct 26037503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 22082277 - 22082125
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    ||||||| ||||||||  |||||||||||||| ||||||||||||   ||||||||| ||||||||||| ||| ||||||||||||| |||||||||||     
T  22082277 gaaagtcttaaaatgtcagaacatctttaggatcgtccaaaacaataacaaatatttcctaaaatataaacactactttaggaatattccacaactgatt 22082178  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
    || |||| ||||| | ||| ||| ||| |||||||| ||||||| ||||||||    
T  22082177 atgtaaatatatgtgcgttccttggtcaataagatagggaaatattgtttcct 22082125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 38405934 - 38406086
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||| ||| ||| ||||||| ||||||||||||    |||||||| ||||||||||| ||  ||||||||||||| |||||||||||     
T  38405934 gaaagtcctaaaatgtcggatcatttttaggatcgtccaaaacaataaaaaatatttcctaaaatataaacattactttaggaatattccacaactgatt 38406033  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     | ||||||||| || ||||||| ||| |||||||||||||||| ||||||||    
T  38406034 ctgtaaagatatacgcgttgcttggtcaataagataaggaaatattgtttcct 38406086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 23624449 - 23624524
Alignment:
Q  3 aaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttag 82  Q
    ||||||||||||||||||||||||||||||||| |||||||||||    ||||||| |||||||||||||||||||||||    
T  23624449 aaagtcctaaaatgtaggaacatctttaggaacttccaaaacaac----aatatttcctaaaatataatcacaactttag 23624524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 23420143 - 23419991
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||| ||||||| | ||||| ||| | || |||    |||||||| |||||||||||  || ||||||| ||||| |||||||||||     
T  23420143 gaaagtcctaaaatgtcggaacatttataggatcgttccaaccaataataaatatttcctaaaatataaaaactactttagaaatattccacaactgatt 23420044  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     |   ||||||||||  ||||||  || |||||||||||||||| ||||||||    
T  23420043 cttagaagatatgcgcattgcttgatcaataagataaggaaatattgtttcct 23419991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 23624600 - 23624651
Alignment:
Q  178 gatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||| |||||||||||||||| ||||||||||||| ||||||||||||||    
T  23624600 gatacatggcacactgaaccgtgccaggatgttggaacatcgtatccaacat 23624651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 259
Target Start/End: Complemental strand, 22082083 - 22082010
Alignment:
Q  186 gcacactgaaccgtggcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacatgttagaac 259  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| || |  | |||||||||| ||||| ||||    
T  22082083 gcacactgaaccgtgccaggatgttggaacatcgtatccaacatcttacagagatgcctgaaatatgttggaac 22082010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 30605085 - 30605040
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||    
T  30605085 aggcacactgaaccgtgccaggatgttggaacatcgtatccaacat 30605040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 22251435 - 22251385
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacatttttc 234  Q
    ||||||||||||||||| ||||||||||||  |||||||||||||| ||||    
T  22251435 aggcacactgaaccgtgccaggatgttggagcatcgtatccaacatctttc 22251385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 20714149 - 20714062
Alignment:
Q  172 aggcatgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacatgttagaac 259  Q
    |||||||| | |||||||||| ||||||  ||||||||||||| |||||||| ||||| ||    | |||||||||||||||| ||||    
T  20714149 aggcatgaaagaaggcacactaaaccgttccaggatgttggaacatcgtatctaacatcttatagagatgcctgaaacatgttggaac 20714062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 38406120 - 38406171
Alignment:
Q  178 gatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||| ||||||||||||||||  |||||| ||||| ||||||||||||||    
T  38406120 gatacagggcacactgaaccgtgctaggatgctggaacatcgtatccaacat 38406171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 23757648 - 23757606
Alignment:
Q  187 cacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||| |||| ||||||||||||| ||||||||||||||    
T  23757648 cacactgaatcgtgccaggatgttggaacatcgtatccaacat 23757606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 23823104 - 23823062
Alignment:
Q  187 cacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||| |||| ||||||||||||| ||||||||||||||    
T  23823104 cacactgaatcgtgccaggatgttggaacatcgtatccaacat 23823062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 26037542 - 26037587
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||| || ||||||||||||| ||||||||| ||||    
T  26037542 aggcacactgaaccatgccaggatgttggaacatcgtatccgacat 26037587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 22183711 - 22183667
Alignment:
Q  185 ggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||||| || ||| |||||| ||||||||||||||    
T  22183711 ggcacactgaaccgtgccaagatattggaacatcgtatccaacat 22183667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 22245945 - 22245877
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataa 70  Q
    |||||||||||||||| ||||||| | ||||| ||| | ||||||  | |||||||| |||||||||||    
T  22245945 gaaagtcctaaaatgtcggaacatgtataggatcgttccaaacaatattaaatatttcctaaaatataa 22245877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 23757795 - 23757691
Alignment:
Q  50 caaatattttctaaaatataatcacaactttaggaatatgccacaactgatcatataaagatatgcgtgttgctttgtcgataagataaggaaatactgt 149  Q
    ||||||||| |||||||||||   | ||||||| ||||| ||||| || ||  |  ||||||||| ||||||||| ||| |||  ||||||||||| |||    
T  23757795 caaatatttcctaaaatataaaatctactttagaaatattccacagctaattctccaaagatatgtgtgttgcttggtcaatacaataaggaaatattgt 23757696  T
Q  150 ttcct 154  Q
    |||||    
T  23757695 ttcct 23757691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 23823251 - 23823147
Alignment:
Q  50 caaatattttctaaaatataatcacaactttaggaatatgccacaactgatcatataaagatatgcgtgttgctttgtcgataagataaggaaatactgt 149  Q
    ||||||||| |||||||||||   | ||||||| ||||| ||||| || ||  |  ||||||||| ||||||||| ||| |||  ||||||||||| |||    
T  23823251 caaatatttcctaaaatataaaatctactttagaaatattccacagctaattctccaaagatatgtgtgttgcttggtcaatacaataaggaaatattgt 23823152  T
Q  150 ttcct 154  Q
    |||||    
T  23823151 ttcct 23823147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 25105046 - 25104978
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataa 70  Q
    |||||||||||||||| ||||||| | ||||| ||| | ||||||  | |||||||| |||||||||||    
T  25105046 gaaagtcctaaaatgtcggaacatttataggatcgttccaaacaatattaaatatttcctaaaatataa 25104978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 25164139 - 25164071
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataa 70  Q
    |||||||||||||||| ||||||| | ||||| ||| | ||||||  | |||||||| |||||||||||    
T  25164139 gaaagtcctaaaatgtcggaacatttataggatcgttccaaacaatattaaatatttcctaaaatataa 25164071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 7e-55; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 23882284 - 23882132
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||| |||||||||||     
T  23882284 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacagcttcaaatatttcctaaaatataatcacatctttaggaatattccacaactgatt 23882185  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     |||||||||||||| ||||||| ||| ||||||||||||||||  |||||||    
T  23882184 ctataaagatatgcgcgttgcttggtcaataagataaggaaatatggtttcct 23882132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 29253268 - 29253116
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    ||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||    
T  29253268 gaaagtcctaaaatgtaggaacatcgttaggaacgtctaaaacagcttcaaatatttcctaaaatataatcactactttaggaatattccacaactgatc 29253169  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
    || |||||||||||| ||||||| ||| |||||||||| |||||| |||||||    
T  29253168 atgtaaagatatgcgcgttgcttggtcaataagataagaaaatacggtttcct 29253116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 15930435 - 15930282
Alignment:
Q  1 agaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||  ||||||||||||||| |||||||||| |   | |||||||    
T  15930435 agaaagtcctaaaatgtaggaacatctttaggaacgtccaaaatagcttcaaatatttcgtaaaatataatcacatctttaggaatgttatataactgat 15930336  T
Q  101 catataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     || |||||||||| | ||||||| ||| ||||||||||||||||  |||||||    
T  15930335 tatgtaaagatatgtgcgttgcttggtcaataagataaggaaatatggtttcct 15930282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 153
Target Start/End: Complemental strand, 12039294 - 12039143
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||   ||||||||| |||||||||||  || ||||||| ||||| ||||| |||||     
T  12039294 gaaagtcctaaaatgtcggaacatctttaggatcgtccaaaacaataacaaatatttcctaaaatataaatactactttagaaatattccacagctgatt 12039195  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcc 153  Q
     | |||||||||| ||||||||| ||| |||||||||||||||| |||||||    
T  12039194 ctgtaaagatatgtgtgttgcttggtcaataagataaggaaatattgtttcc 12039143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 17864060 - 17863908
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||| |||||||| |||||| ||||||||||||   |||||||||||||||||||||  |  ||||||| ||||| ||||||||||      
T  17864060 gaaagtcctaaaatgtcggaacatcattaggatcgtccaaaacaataacaaatattttctaaaatataaatattactttagaaatattccacaactgagt 17863961  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
    || |||||||||| | |||| || ||| |||||||||||||||| ||||||||    
T  17863960 atgtaaagatatgtgcgttgtttggtcaataagataaggaaatattgtttcct 17863908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 20465480 - 20465328
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||| ||||||||||||||| ||| | || |||   ||||||||| |||||||||||  || ||||||| ||||| ||||| |||||     
T  20465480 gaaagtcctaaaatgtcggaacatctttaggatcgttccaaccaataacaaatatttcctaaaatataaatactactttagaaatattccacagctgatt 20465381  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     | |||||||||| | ||||||| ||| |||||||||||||||| ||||||||    
T  20465380 ctgtaaagatatgtgcgttgcttggtcaataagataaggaaatattgtttcct 20465328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 20653642 - 20653794
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||   |||||||||  ||||||||||  |  ||||||| ||||| ||||| |||||     
T  20653642 gaaagtcctaaaatgttggaacatctttaggatcgtccaaaacaataacaaatatttcttaaaatataaatattactttagaaatattccacagctgatt 20653741  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     | |||||||||| | |||||||  || |||||||||||||||| ||||||||    
T  20653742 ctgtaaagatatgtgcgttgcttgatcaataagataaggaaatattgtttcct 20653794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 25805981 - 25806133
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||| ||| ||||||||||||||| |||| |||||||  | |||||| | |||||||||||   | ||||||  ||||| || ||| ||||     
T  25805981 gaaagtcctaaagtgtcggaacatctttaggatcgtctaaaacaatattaaatatctcctaaaatataaatgctactttaaaaatattcctcaattgatt 25806080  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     | || ||||||||| ||||||| ||| |||||||||||||||| ||||||||    
T  25806081 ctgtagagatatgcgcgttgcttggtcaataagataaggaaatattgtttcct 25806133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 251
Target Start/End: Original strand, 19598434 - 19598513
Alignment:
Q  172 aggcatgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacat 251  Q
    |||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| || |  | |||||||||||||    
T  19598434 aggcatgaaacaaggcacactgaaccgtgtcaggatgttggaacatcgtatccaacatcttacagagatgcctgaaacat 19598513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 15930252 - 15930167
Alignment:
Q  174 gcatgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacatgttagaac 259  Q
    |||||| |||||||||||||||||||| ||||||||||||| ||||||||||| || || |  | |||||||||||||||| ||||    
T  15930252 gcatgaaacaaggcacactgaaccgtgccaggatgttggaacatcgtatccaatatcttacagagatgcctgaaacatgtttgaac 15930167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 23882104 - 23882047
Alignment:
Q  172 aggcatgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  23882104 aggcatgaaacaaggcacactgaaccgtgtcaggatgttggaacatcgtatccaacat 23882047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 13869988 - 13869836
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||| ||||||| | ||||| ||| | ||||||    |||||||| ||||||||||||  | ||||||| ||||| |||||||| ||     
T  13869988 gaaagtcctaaaatgtcggaacatttataggatcgttctaaacaataataaatatttcctaaaatataatatctactttagaaatattccacaactaatt 13869889  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     |   ||||||||||||||||||  || |||||||||||||||| ||| ||||    
T  13869888 cttagaagatatgcgtgttgcttgatcaataagataaggaaatattgtgtcct 13869836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 12385252 - 12385177
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacatgttagaac 259  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||| || |  | |||||| ||||||||| ||||    
T  12385252 aggcacactgaaccgtgccaggatgttggaacatcgtatccaacatcttacagagatgcctaaaacatgttggaac 12385177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 13196076 - 13196134
Alignment:
Q  171 taggcatgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||  | ||||||||||||||||| ||||||||||||| ||||||||||||||    
T  13196076 taggcatgaacccaggcacactgaaccgtgccaggatgttggaacatcgtatccaacat 13196134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 17235167 - 17235319
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||| ||||||| | ||||| | | | ||||||    |||||||| ||||||||||||  | | ||||| ||||| ||||| |||||     
T  17235167 gaaagtcctaaaatgtcggaacatttataggatcattccaaacaataataaatatttcctaaaatataatatctaatttagaaatattccacatctgatt 17235266  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     |   ||||||||||||||||||  || ||||| |||||||||| ||||||||    
T  17235267 cttagaagatatgcgtgttgcttgatcaataagttaaggaaatattgtttcct 17235319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 34639603 - 34639555
Alignment:
Q  181 acaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||||||||| || |||||||||| ||||||||||||||    
T  34639603 acaaggcacactgaaccgtgccaagatgttggaacatcgtatccaacat 34639555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 25806176 - 25806218
Alignment:
Q  187 cacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||| ||||||||||||| ||||||||||||||    
T  25806176 cacactgaaccgtgccaggatgttggaacatcgtatccaacat 25806218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 17235359 - 17235404
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||    
T  17235359 aggcacactgaaccgtgccaggatgttggagcatcgtatccaacat 17235404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 17868332 - 17868275
Alignment:
Q  171 taggcatgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaaca 228  Q
    ||||||||| || ||||||||||||||||| || |||||||||| || ||||||||||    
T  17868332 taggcatgaaaccaggcacactgaaccgtgtcacgatgttggaacattgtatccaaca 17868275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 228
Target Start/End: Complemental strand, 17878115 - 17878058
Alignment:
Q  171 taggcatgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaaca 228  Q
    ||||||||| || ||||||||||||||||| || |||||||||| || ||||||||||    
T  17878115 taggcatgaaaccaggcacactgaaccgtgtcacgatgttggaacattgtatccaaca 17878058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 19077908 - 19077953
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||||||||||| || |||||||||| ||||||||||||||    
T  19077908 aggcacactgaaccgtgccaagatgttggaacatcgtatccaacat 19077953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 23879650 - 23879695
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||    
T  23879650 aggcacactgaaccgtgccaggatgttggagcatcgtatccaacat 23879695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 11961231 - 11961279
Alignment:
Q  181 acaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||| |||||| ||||||| ||||||||||||| ||||||||||||||    
T  11961231 acaagacacactaaaccgtgccaggatgttggaacatcgtatccaacat 11961279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 12028681 - 12028577
Alignment:
Q  50 caaatattttctaaaatataatcacaactttaggaatatgccacaactgatcatataaagatatgcgtgttgctttgtcgataagataaggaaatactgt 149  Q
    ||||||||| | |||||||||   | ||||||| ||||| ||||| |||||  | || ||||||||||||||||| | | ||| |||||||||||| |||    
T  12028681 caaatatttgccaaaatataaaatctactttagaaatattccacagctgattctgtatagatatgcgtgttgcttggacaataggataaggaaatattgt 12028582  T
Q  150 ttcct 154  Q
    |||||    
T  12028581 ttcct 12028577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 19077716 - 19077868
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||| ||||||| | ||| | ||| | || |||    |||||||| |||||||||||   | ||||||| ||||| ||||| |||||     
T  19077716 gaaagtcctaaaatgtcggaacatttatagtatcgttccaaccaataataaatatttcctaaaatataaaatctactttagaaatattccacagctgatt 19077815  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     |   ||||||||||||||||||  || |||| ||||||||||| ||||||||    
T  19077816 cttagaagatatgcgtgttgcttgatcaataatataaggaaatattgtttcct 19077868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 26964950 - 26964902
Alignment:
Q  181 acaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||||||||| ||| ||||||||| ||| ||||||||||    
T  26964950 acaaggcacactgaaccgtgtcagaatgttggaacatcatatccaacat 26964902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 17876340 - 17876245
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaact 97  Q
    |||||||||||||||| ||||||||||||||| ||  ||||| ||   |||| |||| |||||||||||  |  ||||||| ||||| ||||||||    
T  17876340 gaaagtcctaaaatgtcggaacatctttaggatcgaacaaaaaaataacaaacatttcctaaaatataaatattactttagaaatattccacaact 17876245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Complemental strand, 29253081 - 29253039
Alignment:
Q  178 gatacaaggcacactgaaccgtggcaggatgttggaatatcgt 220  Q
    |||||| |||||||||||||||| ||||||||||||| |||||    
T  29253081 gatacatggcacactgaaccgtgccaggatgttggaacatcgt 29253039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 8465061 - 8465016
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||| ||||||| ||||||||||||| || |||||||||||    
T  8465061 aggcacactaaaccgtgccaggatgttggaacattgtatccaacat 8465016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 19894062 - 19894017
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||||||||||| || |||||||||  ||||||||||||||    
T  19894062 aggcacactgaaccgtgccaagatgttggagcatcgtatccaacat 19894017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 21722802 - 21722757
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||| || ||||||||||||| || |||||||||||    
T  21722802 aggcacactgaaccatgccaggatgttggaacattgtatccaacat 21722757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 28623165 - 28623132
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaac 35  Q
    |||||||||||||||| |||||||||||||||||    
T  28623165 gaaagtcctaaaatgtcggaacatctttaggaac 28623132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 33666556 - 33666601
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||||||||||| ||||||||||||  ||| ||||||||||    
T  33666556 aggcacactgaaccgtgccaggatgttggagcatcatatccaacat 33666601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 20989328 - 20989224
Alignment:
Q  50 caaatattttctaaaatataatcacaactttaggaatatgccacaactgatcatataaagatatgcgtgttgctttgtcgataagataaggaaatactgt 149  Q
    ||||||||| |||||||||||   | ||||||| ||||| |||||||||||  |   |||||||||| ||||||   || |||||| ||||||||| |||    
T  20989328 caaatatttcctaaaatataaaatctactttagaaatattccacaactgattcttagaagatatgcgcgttgctagatcaataagaaaaggaaatattgt 20989229  T
Q  150 ttcct 154  Q
    |||||    
T  20989228 ttcct 20989224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 33666365 - 33666516
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||| ||||||| | ||||| ||| | ||||||    |||||||| |||||||||||     ||||||| ||||| |||||||||||     
T  33666365 gaaagtcctaaaatgtcggaacat-tataggatcgttccaaacaataataaatatttcctaaaatataaaatacactttagaaatattccacaactgatt 33666463  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     |   ||| |||||| ||| |||  || |||||||||||||||| ||||||||    
T  33666464 cttagaagttatgcgcgttacttgatcaataagataaggaaatattgtttcct 33666516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 26978 - 27130
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  26978 gaaagtcctaaaatataggaacatctttaggaacgtccaaaacaacttcaaatatttcctaaaatataatcacaactttaggaatattccacaactgatc 27077  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     |  ||||||||| | |||||||  || |||||||||||| |||  |||||||    
T  27078 ctgcaaagatatgtgcgttgcttgatcaataagataaggacatatggtttcct 27130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 2 - 144
Target Start/End: Complemental strand, 23477521 - 23477379
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||    
T  23477521 gaaagtcctacaatgtagaaacatctttaggaacgtccaaatcaacttcaaatatttcctaaaatataatcacaactttaggaatattccacaattgatc 23477422  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaat 144  Q
     | |||||||||||  ||||||| ||| |||||||||||||||    
T  23477421 ctgtaaagatatgcacgttgcttggtcaataagataaggaaat 23477379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 7 - 154
Target Start/End: Complemental strand, 15803718 - 15803571
Alignment:
Q  7 tcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatcatata 106  Q
    ||||||||||||||| |||||||| ||| |||||| ||| |||||||||||| |||||||||||||||| |||||||||||| ||| |||||||  | ||    
T  15803718 tcctaaaatgtaggatcatctttatgaatgtccaatacagcttcaaatatttcctaaaatataatcacatctttaggaatattccataactgattctgta 15803619  T
Q  107 aagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
    ||||||||||  ||| || ||| ||||||||||||||||  |||||||    
T  15803618 aagatatgcgcattgtttggtcaataagataaggaaatatggtttcct 15803571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 11667489 - 11667337
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||| ||||||||||| | ||||||||||||| ||||||||||||   ||||||||| |||||||||||  || ||||||| ||||| |||||||| ||     
T  11667489 gaaaatcctaaaatgttgtaacatctttaggatcgtccaaaacaataacaaatatttcctaaaatataaatactactttagaaatattccacaacttatt 11667390  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     | |||||||||||| ||||||| ||| |||||||||||||||| | ||||||    
T  11667389 ctgtaaagatatgcgcgttgcttggtcaataagataaggaaatagtttttcct 11667337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 24986556 - 24986708
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||| |||||||||||| || ||| ||||||||   ||||||||| |||||||||||  |  ||||||| ||||| |||||||||||     
T  24986556 gaaagtcctaaaatgtcggaacatctttatgatcgttcaaaacaaaaacaaatatttcctaaaatataaatattactttagaaatattccacaactgatt 24986655  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     | ||  |||||||| ||||||| ||| |||||||||| ||||| ||||||||    
T  24986656 ttgtatggatatgcgcgttgcttggtcaataagataagaaaatattgtttcct 24986708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 145
Target Start/End: Complemental strand, 20840850 - 20840707
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||| ||||||| | ||||| ||| | || |||   ||||||||| |||||||||||   | ||||||| ||||| |||||||||||     
T  20840850 gaaagtcctaaaatgtcggaacatttataggatcgttccaaccaataacaaatatttcctaaaatataaaatctactttagaaatattccacaactgatt 20840751  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaata 145  Q
     | || ||||||||| |||||||  || ||||||||||||||||    
T  20840750 ttttatagatatgcgcgttgcttgatcaataagataaggaaata 20840707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 154
Target Start/End: Complemental strand, 17850955 - 17850861
Alignment:
Q  60 ctaaaatataatcacaactttaggaatatgccacaactgatcatataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
    |||||||||||||||| |||||||| |||  ||||||||||  | |||||||||| | ||||||| ||| ||||||||||||||||  |||||||    
T  17850955 ctaaaatataatcacatctttaggagtattacacaactgattctgtaaagatatgggcgttgcttggtcaataagataaggaaatatggtttcct 17850861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 25349623 - 25349548
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacatgttagaac 259  Q
    |||||||||||||| || ||||||||||||||||| |||||||||| || | || |||||| ||||||||| ||||    
T  25349623 aggcacactgaaccatgccaggatgttggaatatcatatccaacatcttacataaatgcctaaaacatgttggaac 25349548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 259
Target Start/End: Complemental strand, 10339556 - 10339478
Alignment:
Q  181 acaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacatgttagaac 259  Q
    |||||||||||||||||||| || |||||||||| |||||||||||||| || |  | |||||| ||||||||| ||||    
T  10339556 acaaggcacactgaaccgtgtcaagatgttggaacatcgtatccaacatcttacagaaatgcctaaaacatgttggaac 10339478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 12753825 - 12753870
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||    
T  12753825 aggcacactgaaccgtgccaggatgttggaacatcgtatccaacat 12753870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 20200483 - 20200438
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||| ||||||||||| ||||||||||||| ||||||||||||||    
T  20200483 aggcatactgaaccgtgccaggatgttggaacatcgtatccaacat 20200438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 20840658 - 20840613
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||||||| ||| ||||||||||||| ||||||||||||||    
T  20840658 aggcacactgaactgtgtcaggatgttggaacatcgtatccaacat 20840613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 26971792 - 26971747
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||    
T  26971792 aggcacactgaaccgtgccaggatgttggagcatcgtatccaacat 26971747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 8282682 - 8282730
Alignment:
Q  181 acaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||| |||||||| ||| ||||||||||||| ||||||||||||||    
T  8282682 acaaggctcactgaactgtgtcaggatgttggaacatcgtatccaacat 8282730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 12753633 - 12753673
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaa 42  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  12753633 gaaagtcctaaaaagtaggaacatctttaggaacttccaaa 12753673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 228
Target Start/End: Complemental strand, 22891195 - 22891151
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaaca 228  Q
    ||||||||||||||||| ||||||||||||| || ||||||||||    
T  22891195 aggcacactgaaccgtgccaggatgttggaacatagtatccaaca 22891151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 4246716 - 4246763
Alignment:
Q  107 aagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
    ||||||||||||||||||  || |||||||||||||||| ||||||||    
T  4246716 aagatatgcgtgttgcttgatcaataagataaggaaatattgtttcct 4246763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 1626325 - 1626383
Alignment:
Q  171 taggcatgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||| || ||||||||||||| ||  ||||||||||||| ||| ||||||||||    
T  1626325 taggcatgaaaccaggcacactgaactgttccaggatgttggaacatcatatccaacat 1626383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 20200674 - 20200523
Alignment:
Q  1 agaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgat 100  Q
    ||||||||||||||| | ||||||| | ||||| ||| | || |||   ||||||||| |||||||||||   | ||||||| ||||| |||||||||||    
T  20200674 agaaagtcctaaaatattggaacatttataggatcgttccaaccaataacaaatatttcctaaaatataaat-ctactttagaaatattccacaactgat 20200576  T
Q  101 catataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
        || ||||||||| |||||||  || ||||||| |||||||| ||||||||    
T  20200575 tccttagagatatgcgcgttgcttgatcaataagat-aggaaatattgtttcct 20200523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 17850822 - 17850746
Alignment:
Q  183 aaggcacactgaaccgtggcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacatgttagaac 259  Q
    ||||||||||||||||||  |||||||||||| || |||||||| || || |  | ||| |||||||||||| ||||    
T  17850822 aaggcacactgaaccgtgttaggatgttggaacattgtatccaaaatcttacaaagatgactgaaacatgttggaac 17850746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 22348016 - 22347972
Alignment:
Q  185 ggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||||| || |||||| ||| ||||||||||||||    
T  22348016 ggcacactgaaccgtgccaagatgttagaacatcgtatccaacat 22347972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 51471484 - 51471440
Alignment:
Q  185 ggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||||| |||||||||||||  || ||||||||||    
T  51471484 ggcacactgaaccgtgccaggatgttggaacttcatatccaacat 51471440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 9e-45; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 2 - 145
Target Start/End: Complemental strand, 21253583 - 21253440
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    ||||||| |||||| || |||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||  ||||||||||     
T  21253583 gaaagtcataaaatataagaacatctttaggaacgtccaaaacagcttcaaatatttcctaaaatataatcacatctttaggaatattacacaactgatt 21253484  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaata 145  Q
     | |||||||||||||||||||| ||| ||||||||||||||||    
T  21253483 ctgtaaagatatgcgtgttgcttggtcaataagataaggaaata 21253440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 28051711 - 28051867
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaa----atataatcacaactttaggaatatgccacaact 97  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||    |||||||||||||||||||||||| ||||||||    
T  28051711 gaaagtcctaaaatgtcggaacatctttaggagcgtccaaaacaacttcaaatatttcctaaaatatatataatcacaactttaggaatattccacaact 28051810  T
Q  98 gatcatataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
    |||  | |||||||| ||| |||| || ||| ||| |||||||||||| ||||||||    
T  28051811 gattctgtaaagatacgcgcgttgtttggtcaataggataaggaaatattgtttcct 28051867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 296014 - 296166
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||   ||||||||| |||||||||||   ||||||||||||||| ||||  |||||     
T  296014 gaaagtcctaaaatgtcggaacatctttaggatcgtccaaaacaataacaaatatttcctaaaatataaatgcaactttaggaatattccacctctgatt 296113  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     | |||||||| ||||||||||| ||| |||||||||||||||| ||||||||    
T  296114 ctgtaaagatacgcgtgttgcttggtcaataagataaggaaatattgtttcct 296166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 18063793 - 18063641
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||| | ||||||||||| ||||||||||||||  | |||||||| |||||||||||  || ||||||| ||||| || || |||||     
T  18063793 gaaagtcctaaaatgtcgaaacatctttagaaacgtccaaaacaatattaaatatttcctaaaatataaatactactttagaaatattcctcagctgatt 18063694  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     | || | ||||||||||||||| ||| |||||||||||||||| ||||||||    
T  18063693 ctgtagaaatatgcgtgttgcttggtcaataagataaggaaatattgtttcct 18063641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 286304 - 286219
Alignment:
Q  174 gcatgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacatgttagaac 259  Q
    |||||| ||||| ||||||||||||||  |||||||||||| |||||||||||||| || |  | |||||||||||||||| ||||    
T  286304 gcatgaaacaagacacactgaaccgtgctaggatgttggaacatcgtatccaacatcttacagagatgcctgaaacatgttggaac 286219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 21253403 - 21253347
Alignment:
Q  172 aggcatgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaaca 228  Q
    |||||||| |||||||||||||||||||| ||||||||||||| |||||||| ||||    
T  21253403 aggcatgaaacaaggcacactgaaccgtgtcaggatgttggaacatcgtatctaaca 21253347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 13515157 - 13515053
Alignment:
Q  50 caaatattttctaaaatataatcacaactttaggaatatgccacaactgatcatataaagatatgcgtgttgctttgtcgataagataaggaaatactgt 149  Q
    ||||||||| |||||||||||   | ||||| | ||||| |||||||||||  | || ||||||||| |||||||  || |||||||||||||||| |||    
T  13515157 caaatatttcctaaaatataaaatctacttttgaaatattccacaactgattctgtatagatatgcgcgttgcttgatcaataagataaggaaatattgt 13515058  T
Q  150 ttcct 154  Q
    |||||    
T  13515057 ttcct 13515053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 25020158 - 25020206
Alignment:
Q  181 acaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||| |||||||||| |||||||||| ||||||||||||||    
T  25020158 acaaggcacactaaaccgtggcaagatgttggaacatcgtatccaacat 25020206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 6578940 - 6578873
Alignment:
Q  187 cacactgaaccgtggcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacatgtt 254  Q
    |||||||||||||| ||||||||||||| |||||||||||||| || |  | |||||| |||||||||    
T  6578940 cacactgaaccgtgtcaggatgttggaacatcgtatccaacatcttacagaaatgcctaaaacatgtt 6578873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 18063603 - 18063556
Alignment:
Q  182 caaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||    
T  18063603 caaggcacactgaaccgtgccaggatgttggaacgtcgtatccaacat 18063556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 17042167 - 17042109
Alignment:
Q  171 taggcatgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||  | ||||||||||||||||| |||||||| |||| ||||||||||||||    
T  17042167 taggcatgaacccaggcacactgaaccgtgccaggatgtcggaacatcgtatccaacat 17042109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 3551885 - 3551828
Alignment:
Q  172 aggcatgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||| | |||||||||||||||||||| || |||||||||| ||| ||||||||||    
T  3551885 aggcataaaacaaggcacactgaaccgtgccacgatgttggaacatcatatccaacat 3551828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 214492 - 214444
Alignment:
Q  181 acaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||| |||||||||||||| || |||||||||| ||||||||||||||    
T  214492 acaagacacactgaaccgtgccaagatgttggaacatcgtatccaacat 214444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 8225849 - 8225893
Alignment:
Q  185 ggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||||| || |||||||||| ||||||||||||||    
T  8225849 ggcacactgaaccgtgccaagatgttggaacatcgtatccaacat 8225893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 17042340 - 17042300
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaa 42  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  17042340 gaaagtcctaaaaagtaggaacatctttaggaacttccaaa 17042300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 18477860 - 18477904
Alignment:
Q  185 ggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||||| || |||||||||| ||||||||||||||    
T  18477860 ggcacactgaaccgtgccaagatgttggaacatcgtatccaacat 18477904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 13515010 - 13514967
Alignment:
Q  186 gcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||||  |||||||||||| ||||||||||||||    
T  13515010 gcacactgaaccgtgctaggatgttggaacatcgtatccaacat 13514967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 18482764 - 18482722
Alignment:
Q  187 cacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||| |||||||||| || ||||||||||||||    
T  18482764 cacactgaaccgtgtcaggatgttgaaacatcgtatccaacat 18482722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Complemental strand, 979787 - 979730
Alignment:
Q  172 aggcatgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||| | |||||||||||||||||||| |  |||||||||| ||| ||||||||||    
T  979787 aggcataaaacaaggcacactgaaccgtgccgagatgttggaacatcatatccaacat 979730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 7028657 - 7028589
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataa 70  Q
    |||||||||||||||| ||||||| | ||||| ||| | ||||||  | |||||||| |||||||||||    
T  7028657 gaaagtcctaaaatgtcggaacatttataggatcgttccaaacaatataaaatatttcctaaaatataa 7028589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 11656881 - 11656909
Alignment:
Q  7 tcctaaaatgtaggaacatctttaggaac 35  Q
    |||||||||||||||||||||||||||||    
T  11656881 tcctaaaatgtaggaacatctttaggaac 11656909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 13791250 - 13791402
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    ||||||||||||||||  |||||| | |||||  || | ||||||    |||||||| ||||||||||||    ||||||| ||||| |||||||||||     
T  13791250 gaaagtcctaaaatgtcagaacatttataggattgttccaaacaataataaatatttcctaaaatataatatttactttagaaatattccacaactgatt 13791349  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     |   |||||||| | |||| ||  || |||||||||||||||| ||||||||    
T  13791350 cttagaagatatgtgcgttgtttgatcaataagataaggaaatattgtttcct 13791402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 18548221 - 18548373
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||| ||||||| |  |||| ||| | ||||||    |||||||| ||||||||||||  | ||||||| ||||| |||||  ||||     
T  18548221 gaaagtcctaaaatgtcggaacatttacaggatcgttccaaacaataataaatatttcctaaaatataatatctactttagaaatattccacagttgatt 18548320  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     |  |||||||||   |||||||  || |||||||||||||||| ||| ||||    
T  18548321 cttaaaagatatgtccgttgcttgatcaataagataaggaaatattgtgtcct 18548373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 15699922 - 15699785
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactga-t 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||||||||| ||| | |||| |    
T  15699922 gaaagtcctaaaatgtaggaacatctttaggagcgtccaaaacaacttcaaatatttcctaaaatatgaacacaactttaggaatattccaaagctgatt 15699823  T
Q  101 catataaagatatgcgtgttgctttgtcgataagataag 139  Q
    ||| |||||||||||||||| ||| ||| ||||||||||    
T  15699822 cat-taaagatatgcgtgtttcttggtcaataagataag 15699785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 19183269 - 19183118
Alignment:
Q  3 aaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatca 102  Q
    |||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||  ||||||||||      
T  19183269 aaagtcctaaaatgtaggaggatctttaggaacatccaaaacaacttcaaatattttctaaaatatgatcacatctttaggaatattacacaactgattc 19183170  T
Q  103 tataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
    |  ||||||||| | |||| || ||| | ||||||||||||||  |||||||    
T  19183169 tgaaaagatatgtgcgttgtttggtcaagaagataaggaaatatggtttcct 19183118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 15162070 - 15161918
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||| ||  ||||||||||||  ||| || |||   ||||||||| |||||||||||  || ||||||| ||||| ||||| |||||     
T  15162070 gaaagtcctaaaatgtcgggtcatctttaggaatctcccaaccaataacaaatatttcctaaaatataaatactactttagaaatattccacagctgatt 15161971  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     | |||||||||| | ||||||| ||| |||||||||||||||| ||||||||    
T  15161970 ctgtaaagatatgtgcgttgcttggtcaataagataaggaaatattgtttcct 15161918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 10718241 - 10718285
Alignment:
Q  185 ggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||    
T  10718241 ggcacactgaaccgtgccaggatgttggaacatcgtatccaacat 10718285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 10932010 - 10932054
Alignment:
Q  185 ggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||    
T  10932010 ggcacactgaaccgtgccaggatgttggaacatcgtatccaacat 10932054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 9069696 - 9069754
Alignment:
Q  171 taggcatgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||| |  ||||||||||||||||  ||||||||||||| ||||||||||||||    
T  9069696 taggcatgaaatcaggcacactgaaccgttccaggatgttggaacatcgtatccaacat 9069754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 154
Target Start/End: Original strand, 16384465 - 16384615
Alignment:
Q  4 aagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatcat 103  Q
    |||||||||||||| ||||||| | ||||| ||| | ||||||    |||||||| |||||||||||     ||||||| ||||| |||||||||||  |    
T  16384465 aagtcctaaaatgttggaacatttataggatcgttccaaacaataataaatatttcctaaaatataaaatacactttagaaatattccacaactgattct 16384564  T
Q  104 ataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
       ||||||||||||||| ||  || ||||| |||||||||| ||||||||    
T  16384565 tagaagatatgcgtgttgtttgatcaataagttaaggaaatattgtttcct 16384615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 18601054 - 18601009
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||    
T  18601054 aggcacactgaaccgtgccaggatgttggagcatcgtatccaacat 18601009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 49975014 - 49975059
Alignment:
Q  185 ggcacactgaaccgtggcaggatgttggaatatcgtatccaacatt 230  Q
    ||||||||||| |||| ||||||||||||| |||||||||||||||    
T  49975014 ggcacactgaatcgtgccaggatgttggaacatcgtatccaacatt 49975059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 10683013 - 10683057
Alignment:
Q  185 ggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||||| || |||||||||| ||||||||||||||    
T  10683013 ggcacactgaaccgtgccaagatgttggaacatcgtatccaacat 10683057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 10896653 - 10896697
Alignment:
Q  185 ggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||||| || |||||||||| ||||||||||||||    
T  10896653 ggcacactgaaccgtgccaagatgttggaacatcgtatccaacat 10896697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 15699736 - 15699685
Alignment:
Q  178 gatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||| |||||||||||| ||| ||||||||||||| |||| |||||||||    
T  15699736 gatacatggcacactgaactgtgccaggatgttggaacatcggatccaacat 15699685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 15623201 - 15623271
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacatgtt 254  Q
    ||||| ||| ||||||| ||||||||||||| |||||||||||||| || |  | |||||| |||||||||    
T  15623201 aggcatacttaaccgtgccaggatgttggaacatcgtatccaacatcttacagaaatgcctaaaacatgtt 15623271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 32862408 - 32862454
Alignment:
Q  183 aaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||||||  ||||||||||||| ||| ||||||||||    
T  32862408 aaggcacactgaaccgtatcaggatgttggaacatcatatccaacat 32862454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 10723056 - 10723097
Alignment:
Q  188 acactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||||||| || |||||||||| ||||||||||||||    
T  10723056 acactgaaccgtgccaagatgttggaacatcgtatccaacat 10723097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 10936825 - 10936866
Alignment:
Q  188 acactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||||||| || |||||||||| ||||||||||||||    
T  10936825 acactgaaccgtgccaagatgttggaacatcgtatccaacat 10936866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 16384655 - 16384700
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||||||| ||| ||||||||||||  ||||||||||||||    
T  16384655 aggcacactgaactgtgtcaggatgttggagcatcgtatccaacat 16384700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 259
Target Start/End: Complemental strand, 19183074 - 19183001
Alignment:
Q  186 gcacactgaaccgtggcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacatgttagaac 259  Q
    ||||||||||||||| ||||||||  ||| |||||||||||||| || |  | |||||| ||||||||| ||||    
T  19183074 gcacactgaaccgtgccaggatgtcagaacatcgtatccaacatcttacagagatgcctaaaacatgttggaac 19183001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 41786186 - 41786243
Alignment:
Q  172 aggcatgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||| | ||||| || ||||||||||| ||||||||||||| ||| ||||||||||    
T  41786186 aggcataaaacaagacatactgaaccgtgccaggatgttggaacatcatatccaacat 41786243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 10197641 - 10197597
Alignment:
Q  185 ggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||||| || |||||||||| ||| ||||||||||    
T  10197641 ggcacactgaaccgtgccaagatgttggaacatcatatccaacat 10197597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 33744043 - 33744083
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaa 42  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  33744043 gaaagtcctaaaaagtaggaacatctttaagaacttccaaa 33744083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 259
Target Start/End: Original strand, 15328906 - 15329160
Alignment:
Q  10 taaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatcatataaag 109  Q
    ||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||| || |||||||||||||||||     |||||||| | ||  |    
T  15328906 taaaatgtaggaatatctttaggggcgtccaaaacaacttcaaatattttctaaaatacaaacacaactttaggaatat----taactgatcttgtagtg 15329001  T
Q  110 atatgcgtgttgctttgtcgataagataaggaaatactgtttcc----------taggtgcgcatactttttaggcatgatacaaggcacactgaaccgt 199  Q
    ||||||| ||||||| ||| |||||||||||||||| |||||||          ||||||||| |||     ||||| |||||| ||||||| |||||||    
T  15329002 atatgcgcgttgcttagtcaataagataaggaaatattgtttccttaaatagtttaggtgcgcgtac-aaacaggcaagatacatggcacacagaaccgt 15329100  T
Q  200 ggcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacatgttagaac 259  Q
    | ||||||||||||| |||||||||||||| || |  | ||||||||| |||||| ||||    
T  15329101 gccaggatgttggaacatcgtatccaacatcttacagacatgcctgaatcatgttggaac 15329160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 21530951 - 21531103
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    ||||||| ||||||||||||||||||| ||||||||| | ||||  ||||||||||||||||||||||| |||| ||||||||||||  ||||||||||     
T  21530951 gaaagtcataaaatgtaggaacatcttcaggaacgtctataacagattcaaatattttctaaaatataaacacatctttaggaatattgcacaactgatt 21531050  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     | || | |||||| |||| ||| ||| ||||||||||||||||  |||||||    
T  21531051 ttgtatatatatgcatgttacttggtcaataagataaggaaatatggtttcct 21531103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 259
Target Start/End: Complemental strand, 21249604 - 21249517
Alignment:
Q  172 aggcatgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacatgttagaac 259  Q
    |||||||| |||||||||||| ||||||| ||||||||||||| |||||||||||||| || |  | |||||||||||||||| ||||    
T  21249604 aggcatgaaacaaggcacactaaaccgtgccaggatgttggaacatcgtatccaacatcttacagaaatgcctgaaacatgttggaac 21249517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 27108209 - 27108253
Alignment:
Q  185 ggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||    
T  27108209 ggcacactgaaccgtgccaggatgttggaacatcgtatccaacat 27108253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 259
Target Start/End: Original strand, 21531131 - 21531218
Alignment:
Q  172 aggcatgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacatgttagaac 259  Q
    |||||||| ||||||||||| ||||| |  ||||||||||||| || ||||||||||| || |  | |||||||||||||||| ||||    
T  21531131 aggcatgaaacaaggcacaccgaaccataccaggatgttggaacattgtatccaacatcttacagagatgcctgaaacatgttggaac 21531218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 24789553 - 24789508
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||    
T  24789553 aggcacactgaaccgtgccaggatgttggagcatcgtatccaacat 24789508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 24311246 - 24311202
Alignment:
Q  185 ggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||||| ||||||||||||| || |||||||||||    
T  24311246 ggcacactgaaccgtgccaggatgttggaacattgtatccaacat 24311202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 27111798 - 27111842
Alignment:
Q  185 ggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||| ||||||||| ||||||||||||| ||||||||||||||    
T  27111798 ggcacattgaaccgtgccaggatgttggaacatcgtatccaacat 27111842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 36397883 - 36397839
Alignment:
Q  185 ggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||||| || |||||||||| ||||||||||||||    
T  36397883 ggcacactgaaccgtgccaagatgttggaacatcgtatccaacat 36397839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 23759196 - 23759349
Alignment:
Q  1 agaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactga- 99  Q
    ||||||||||||||||| ||||||| | ||||| ||| | ||||||  | |||||||| |||||||||||     ||||||| ||||| | ||||||||     
T  23759196 agaaagtcctaaaatgttggaacatttataggatcgttccaaacaatattaaatatttcctaaaatataaaatacactttagaaatattctacaactgat 23759295  T
Q  100 tcatataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
    || ||| | |||||||  |||||||  || ||||| |||||||||| ||||||||    
T  23759296 tcttat-atgatatgcacgttgcttgatcaataagttaaggaaatattgtttcct 23759349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 18622247 - 18622333
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatat 88  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||| |||||    
T  18622247 gaaagtcctaaagtgtaggaacatctttaggaatgtccaaaacaacttcaaatatttcctaaaatataatcacacctttagaaatat 18622333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 4 - 154
Target Start/End: Original strand, 26536861 - 26537012
Alignment:
Q  4 aagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactga-tca 102  Q
    |||||||||||||| ||||||||||||| | ||||||||||||   |||||||||  ||||||||||  || |||||||||||||  ||||||||| |      
T  26536861 aagtcctaaaatgtcggaacatctttagtatcgtccaaaacaataacaaatatttcataaaatataaatactactttaggaatatttcacaactgatttt 26536960  T
Q  103 tataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
    | |||||||||||| ||||||| ||| |||||||||||||||| ||||||||    
T  26536961 tgtaaagatatgcgcgttgcttggtcaataagataaggaaatattgtttcct 26537012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 154
Target Start/End: Original strand, 33977633 - 33977784
Alignment:
Q  3 aaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatca 102  Q
    ||||||||||||||| ||||||||| ||||| |||||||| |||   ||||| ||| |||||| ||||  || ||||||||||||| |||||||||||      
T  33977633 aaagtcctaaaatgtcggaacatctctaggatcgtccaaatcaataacaaatttttcctaaaaaataaatactactttaggaatattccacaactgattc 33977732  T
Q  103 tataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
    | ||||||||||||  ||||||  || |||||||||||||||| ||||||||    
T  33977733 tgtaaagatatgcgcattgcttgatcaataagataaggaaatattgtttcct 33977784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 27925039 - 27924887
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||| ||||||||||||||| ||| | || |||   |||||||||  ||||||||||   | ||||||| ||||| |||||  ||||     
T  27925039 gaaagtcctaaaatgtcggaacatctttaggatcgttccaaccaataacaaatatttcataaaatataaaatctactttagaaatattccacagttgatt 27924940  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     | || ||||||||| ||||||||||| |||||||||||||||| ||||||||    
T  27924939 ctgtatagatatgcgcgttgctttgtcaataagataaggaaatattgtttcct 27924887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 154
Target Start/End: Original strand, 33962333 - 33962458
Alignment:
Q  29 taggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatcatataaagatatgcgtgttgctttgtc 128  Q
    ||||| |||||||| |||   ||||| ||| |||||| ||||  || ||||||||||||| |||| ||||||  | |||||||||||| |||||||  ||    
T  33962333 taggatcgtccaaatcaataacaaatttttcctaaaaaataaatactactttaggaatattccacgactgattctgtaaagatatgcgcgttgcttgatc 33962432  T
Q  129 gataagataaggaaatactgtttcct 154  Q
     |||||||||||||||| ||||||||    
T  33962433 aataagataaggaaatattgtttcct 33962458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 259
Target Start/End: Original strand, 18622423 - 18622501
Alignment:
Q  181 acaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacatgttagaac 259  Q
    |||||||||||||||||||| || |||||||||| |||||||||||||| || |  | ||| |||||||||||| ||||    
T  18622423 acaaggcacactgaaccgtgccaagatgttggaacatcgtatccaacatcttacagagatgtctgaaacatgttggaac 18622501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 20254272 - 20254224
Alignment:
Q  183 aaggcacactgaaccgtggcaggatgttggaatatcgtatccaacattt 231  Q
    |||||||||||||||||| ||||||||||||| ||| ||||||||||||    
T  20254272 aaggcacactgaaccgtgtcaggatgttggaacatcatatccaacattt 20254224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 45136684 - 45136836
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||| ||||||| | ||||| ||| | || |||   ||||||||| |||||||||||     ||||||| ||||| ||||| |||||     
T  45136684 gaaagtcctaaaatgtcggaacatttataggatcgttccaaccaataacaaatatttcctaaaatataaaatatactttagaaatattccacagctgatt 45136783  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     |  |||||||| ||  |||||||||| ||||||||| |||||| ||||||||    
T  45136784 cttcaaagatatacgcattgctttgtcaataagataatgaaatattgtttcct 45136836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 154
Target Start/End: Original strand, 22485706 - 22485858
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||| ||||||| | ||||| ||| | ||||||  | |||||||| |||||||||||     ||||||| ||||| ||||| |||||     
T  22485706 gaaagtcctaaaatgtcggaacatttataggatcgttctaaacaatattaaatatttcctaaaatataaaatacactttagaaatattccacagctgatt 22485805  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     |  || ||||||||||||||||  || ||||| || | ||||| ||||||||    
T  22485806 cttaaatgatatgcgtgttgcttgatcaataagttaggaaaatattgtttcct 22485858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 23540945 - 23540841
Alignment:
Q  50 caaatattttctaaaatataatcacaactttaggaatatgccacaactgatcatataaagatatgcgtgttgctttgtcgataagataaggaaatactgt 149  Q
    ||||||||| |||||||||||   | ||||||| ||||| ||||| |||||  |   |||||||||| |||||||  || |||||||||||||||| |||    
T  23540945 caaatatttcctaaaatataaaatctactttagaaatattccacagctgattcttagaagatatgcgcgttgcttaatcaataagataaggaaatattgt 23540846  T
Q  150 ttcct 154  Q
    |||||    
T  23540845 ttcct 23540841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 27924847 - 27924802
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||| |||| ||||||||||||| ||| ||||||||||    
T  27924847 aggcacactgaatcgtgtcaggatgttggaacatcttatccaacat 27924802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 9997071 - 9997111
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaa 42  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  9997071 gaaagtcctaaaaagtaggaacatctttatgaacttccaaa 9997111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 22485898 - 22485946
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacatttt 232  Q
    ||||||||||||| ||| ||||||||||||  |||||||||||| ||||    
T  22485898 aggcacactgaactgtgccaggatgttggagcatcgtatccaacttttt 22485946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 258
Target Start/End: Original strand, 26537055 - 26537127
Alignment:
Q  187 cacactgaaccgtggcaggatgttggaatatcgtatccaacatttttcttatatgcctgaa-acatgttagaa 258  Q
    |||||||||||||| || |||||||||| ||| |||||||||| || |  |||||||| || |||||||||||    
T  26537055 cacactgaaccgtgccatgatgttggaacatcatatccaacatcttacggatatgcctaaacacatgttagaa 26537127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 8166 - 8013
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaactt-caaatattttctaaaatataatcacaactttaggaatatgccacaactgat 100  Q
    |||||||||||||||| ||||||||||||||| |||||  ||| | |  ||||||||| |||||||||||  || ||||||| | ||| ||||| |||||    
T  8166 gaaagtcctaaaatgtcggaacatctttaggatcgtccccaaccaataacaaatatttcctaaaatataaatactactttagaagtattccacagctgat 8067  T
Q  101 catataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
      |||||||||||| | ||||||| ||| |||||||||||||||| ||||||||    
T  8066 tctataaagatatgtgcgttgcttggtcaataagataaggaaatattgtttcct 8013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 154
Target Start/End: Complemental strand, 7124 - 6972
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatc 101  Q
    |||||||||||||||| ||||||||||||||| ||| | || |||   ||||||||| |||||||||||  || ||||||| ||||| ||| |||||||     
T  7124 gaaagtcctaaaatgttggaacatctttaggatcgttccaaccaataacaaatatttcctaaaatataaatactactttagaaatattccagaactgatt 7025  T
Q  102 atataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
     | ||||| |||||  ||||||| ||| |||||| ||||||||| | ||||||    
T  7024 ttgtaaagctatgcccgttgcttggtcaataagaaaaggaaatattatttcct 6972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 17710 - 17559
Alignment:
Q  3 aaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatca 102  Q
    ||||||||||||||| ||||||||||||||| | | | || |||    |||||||| |||||||||||  || ||||||| ||||| ||| | |||||      
T  17710 aaagtcctaaaatgttggaacatctttaggatcattccaaccaataaaaaatatttcctaaaatataaatactactttagaaatattccatagctgattc 17611  T
Q  103 tataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
    | |||||||||||| |||  || ||  |||||||||||||||| ||||||||    
T  17610 tgtaaagatatgcgcgttagttggttaataagataaggaaatattgtttcct 17559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 27104 - 26953
Alignment:
Q  3 aaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatca 102  Q
    ||||||||||||||| ||||||||||||||| | | | || |||    |||||||| |||||||||||  || ||||||| ||||| ||| | |||||      
T  27104 aaagtcctaaaatgttggaacatctttaggatcattccaaccaataaaaaatatttcctaaaatataaatactactttagaaatattccatagctgattc 27005  T
Q  103 tataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
    | |||||||||||| |||  || ||  |||||||||||||||| ||||||||    
T  27004 tgtaaagatatgcgcgttagttggttaataagataaggaaatattgtttcct 26953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 17519 - 17474
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||||||| |||||||||||| ||| |||| |||||    
T  17519 aggcacactgaaccgtggtaggatgttggaacatcatatctaacat 17474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 26913 - 26868
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||||||| |||||||||||| ||| |||| |||||    
T  26913 aggcacactgaaccgtggtaggatgttggaacatcatatctaacat 26868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 154
Target Start/End: Complemental strand, 16196 - 16055
Alignment:
Q  13 aatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatcatataaagata 112  Q
    ||||| ||||||||||||||| ||| | || |||   ||||||||||||||||||||||  | ||||||| ||||| | ||| |||||  | || |||||    
T  16196 aatgtcggaacatctttaggatcgttccaaccaataacaaatattttctaaaatataatatctactttagaaatattcaacatctgattctgtatagata 16097  T
Q  113 tgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
    ||||  |||||| ||| ||||||||| |||||| ||||||||    
T  16096 tgcgcattgcttggtcaataagataatgaaatattgtttcct 16055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 16015 - 15970
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||| |||||||| ||||||||||||| ||||||||||||||    
T  16015 aggcacaccgaaccgtgccaggatgttggaacatcgtatccaacat 15970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 154
Target Start/End: Complemental strand, 16911 - 16760
Alignment:
Q  3 aaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatca 102  Q
    ||||||||||||||| ||||||||||||||| ||| | || |||   ||||||||| |||||||||||   | ||||||| ||||| ||||  |||||      
T  16911 aaagtcctaaaatgtcggaacatctttaggatcgttccaaccaataacaaatatttcctaaaatataaaatctactttagaaatattccaccgctgattc 16812  T
Q  103 tataaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
    | || ||||||||| |||| || ||| ||||| ||||||| || ||||||||    
T  16811 tgtatagatatgcgcgttgtttggtcaataagttaaggaattattgtttcct 16760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 16270 - 16315
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||    
T  16270 aggcacactgaaccgtgccaggatgttggaacatcgtatccaacat 16315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 47785 - 47740
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||    
T  47785 aggcacactgaaccgtgccaggatgttggagtatcgtatccaacat 47740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 47978 - 47910
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataa 70  Q
    |||||||||||||||| ||||||| | ||||| ||| | ||||||  | |||||||| |||||||||||    
T  47978 gaaagtcctaaaatgtcggaacatttataggatcgttccaaacaatattaaatatttcctaaaatataa 47910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 37355 - 37403
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacatttt 232  Q
    ||||||||||||||||| ||||||||||||| || ||||||||||||||    
T  37355 aggcacactgaaccgtgtcaggatgttggaacattgtatccaacatttt 37403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 37166 - 37315
Alignment:
Q  5 agtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatatgccacaactgatcata 104  Q
    ||||||||||||| ||||||| | ||||| ||| | ||||||    |||||||| ||||||  ||||  ||  ||||| ||||| ||||| |||||  |     
T  37166 agtcctaaaatgtcggaacatttataggatcgttccaaacaataataaatatttcctaaaaactaatatcatttttagaaatattccacagctgattctt 37265  T
Q  105 taaagatatgcgtgttgctttgtcgataagataaggaaatactgtttcct 154  Q
      ||||||||||||||||||  || |||||||||||||||| ||||||||    
T  37266 agaagatatgcgtgttgcttgatcaataagataaggaaatattgtttcct 37315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 9295 - 9395
Alignment:
Q  50 caaatattttctaaaatataatcacaactttaggaatatgccacaactgatcatataaagatatgcgtgttgctttgtcgataagataaggaaatactgt 149  Q
    ||||||||| |||||||||||   | ||||||| ||||| ||||| |||||  | || ||||||||||||||||| | | |||||||||||||||| |||    
T  9295 caaatatttcctaaaatataaaatctactttagaaatattccacagctgattttgtatagatatgcgtgttgcttggacaataagataaggaaatattgt 9394  T
Q  150 t 150  Q
    |    
T  9395 t 9395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 715 - 772
Alignment:
Q  171 taggcatgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||| || ||||||||||||||||| || |||||||||| ||||||||||||||    
T  715 taggcatga-accaggcacactgaaccgtgccaagatgttggaacatcgtatccaacat 772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 536 - 576
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaa 42  Q
    |||||||||||||  ||||||||||||||||||| ||||||    
T  536 gaaagtcctaaaaaataggaacatctttaggaacttccaaa 576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 1762 - 1717
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  1762 aggcacactgaaccgtgccagaatgttggaacatcgtatccaacat 1717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 25072 - 25027
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||||||||||| ||||||||||||  ||||||||||||||    
T  25072 aggcacactgaaccgtgccaggatgttggagcatcgtatccaacat 25027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 25264 - 25196
Alignment:
Q  2 gaaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatattttctaaaatataa 70  Q
    |||||||||||||||| ||||||| | ||||| ||| | ||||||  | |||||||| |||||||||||    
T  25264 gaaagtcctaaaatgtcggaacatttataggatcgttccaaacaatattaaatatttcctaaaatataa 25196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 229
Target Start/End: Original strand, 88511 - 88556
Alignment:
Q  184 aggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||| || ||||||||||||| || |||||||||||    
T  88511 aggcacactgaaccatgtcaggatgttggaacattgtatccaacat 88556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 5733 - 5777
Alignment:
Q  185 ggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||||||| || ||||||||||||| ||| ||||||||||    
T  5733 ggcacactgaaccatgccaggatgttggaacatcatatccaacat 5777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 11988 - 12032
Alignment:
Q  185 ggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||||||| || ||||||||||||| ||| ||||||||||    
T  11988 ggcacactgaaccatgccaggatgttggaacatcatatccaacat 12032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0480 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0480
Description:

Target: scaffold0480; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 11946 - 11990
Alignment:
Q  185 ggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||||||| |||||||||| || ||||| ||||||||    
T  11946 ggcacactgaaccgtgccaggatgttgaaacatcgtgtccaacat 11990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 45361 - 45317
Alignment:
Q  185 ggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    ||||||||||||| || || |||||||||| ||||||||||||||    
T  45361 ggcacactgaaccatgccaagatgttggaacatcgtatccaacat 45317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 38067 - 38115
Alignment:
Q  181 acaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||| ||||| ||| ||| ||||||||||||| ||||||||||||||    
T  38067 acaaggtacacttaactgtgccaggatgttggaacatcgtatccaacat 38115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 50303 - 50259
Alignment:
Q  185 ggcacactgaaccgtggcaggatgttggaatatcgtatccaacat 229  Q
    |||||||||||| |||  |||||||||||| ||||||||||||||    
T  50303 ggcacactgaactgtgctaggatgttggaacatcgtatccaacat 50259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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