View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11621_low_28 (Length: 269)
Name: NF11621_low_28
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11621_low_28 |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 25 - 269
Target Start/End: Original strand, 51111798 - 51112042
Alignment:
| Q |
25 |
tatttttggttttctgagcagtatcagctccatactttgctgtcttctgagtggtgtcattggcatattcagaagcctctttggttttttgagcagcatc |
124 |
Q |
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| T |
51111798 |
tatttttggttttctgagcagtatcagctccatactttgctgtcttctgagtggtgtcattggcatattcagaagcctctttggttttttgagcagcatc |
51111897 |
T |
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| Q |
125 |
acctgcatagtctttagatttgtatgctgcatcattggcatactctctagtattgtgagcagcatcacctgcataatctttggctttttgtgcagcttca |
224 |
Q |
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| T |
51111898 |
acctgcatagtctttagatttgtatgctgcatcattggcatactctctagtattgtgagcagcatcacctgcataatctttggctttttgtgcagcttca |
51111997 |
T |
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| Q |
225 |
ccagcatagtctttggtcttatatgctgcatctttggtcttctct |
269 |
Q |
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| T |
51111998 |
ccagcatagtctttggtcttatatgctgcatctttggtcttctct |
51112042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 51112043 - 51112133
Alignment:
| Q |
117 |
gcagcatcacctgcatagtctttagatttgtatgctgcatcattggcatactctctagtattgtgagcagcatcacctgcataatctttgg |
207 |
Q |
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| T |
51112043 |
gcagcatcacctgcatagtctttagacttgtatgctgcagcattggcatattctcttgtcttttctgtagcatcacccgcataatctttgg |
51112133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 244
Target Start/End: Original strand, 51112304 - 51112431
Alignment:
| Q |
117 |
gcagcatcacctgcatagtctttagatttgtatgctgcatcattggcatactctctagtattgtgagcagcatcacctgcataatctttggctttttgtg |
216 |
Q |
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| T |
51112304 |
gcagcatcaccagcatactctttagacttgtatgctgcatcagttgcatactctttgctcttctgagtagcaccaccagcatagtctttggttttctgtg |
51112403 |
T |
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| Q |
217 |
cagcttcaccagcatagtctttggtctt |
244 |
Q |
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| T |
51112404 |
cagcatcgcctgcatactctttggtctt |
51112431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 51112438 - 51112493
Alignment:
| Q |
185 |
agcatcacctgcataatctttggctttttgtgcagcttcaccagcatagtctttgg |
240 |
Q |
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| T |
51112438 |
agcatcacctgcatactctttggttttttgtgcagcatcacctgcatactctttgg |
51112493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 51112115 - 51112161
Alignment:
| Q |
222 |
tcaccagcatagtctttggtcttatatgctgcatctttggtcttctc |
268 |
Q |
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| T |
51112115 |
tcacccgcataatctttggtcttgtatgctgcatctttggtcttctc |
51112161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 51112217 - 51112295
Alignment:
| Q |
183 |
gcagcatcacctgcataatctttggctttttgtgcagcttcaccagcatagtctttggtcttatatgctgcatctttgg |
261 |
Q |
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| T |
51112217 |
gcagcatcacttccataatctttggtcttctctgctgcatcacctgcataatctttggtcttgtatgctgcatctttgg |
51112295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 51112453 - 51112518
Alignment:
| Q |
101 |
ctctttggttttttgagcagcatcacctgcatagtctttagatttgtatgctgcatcattggcata |
166 |
Q |
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| T |
51112453 |
ctctttggttttttgtgcagcatcacctgcatactctttggacttgtgcgctgcaccagtggcata |
51112518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 51112163 - 51112206
Alignment:
| Q |
216 |
gcagcttcaccagcatagtctttggtcttatatgctgcatcttt |
259 |
Q |
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| T |
51112163 |
gcagcatcaccagcatagtctttagtcttgtatgctgcatcttt |
51112206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 51112163 - 51112203
Alignment:
| Q |
117 |
gcagcatcacctgcatagtctttagatttgtatgctgcatc |
157 |
Q |
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| T |
51112163 |
gcagcatcaccagcatagtctttagtcttgtatgctgcatc |
51112203 |
T |
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