View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11621_low_3 (Length: 654)
Name: NF11621_low_3
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11621_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 2e-82; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 463 - 642
Target Start/End: Complemental strand, 11663854 - 11663675
Alignment:
| Q |
463 |
ttgaaaggctatgatatgttgtaatcttcagatctttcaagtgttgatatgtttgtgcttttgtttgttaaagtatgaaagtttaagttgtttgtgataa |
562 |
Q |
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| T |
11663854 |
ttgaaaggctatgacatgttgtaatcttcagatctttcaagtgttgatatgtttgtgctttcgtttgttaaagtatgaaagtttaagtgatttgtgataa |
11663755 |
T |
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| Q |
563 |
attgataatgccttaagtcgcctattattgagtgctccggtactagattgcaaccttactgcattgtcatgttcctttct |
642 |
Q |
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| T |
11663754 |
actgataatgccttaagttgcctattattgagtgctccggtactagattgcaaccttactgcattgtcatgttcctttct |
11663675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 307 - 420
Target Start/End: Complemental strand, 11665574 - 11665461
Alignment:
| Q |
307 |
cgactagatagcttgcaatcccttttgtccaagctccctgtaaagtgagtattcagctggtgtttatcctgattaagaaagaatggtgctattacagcag |
406 |
Q |
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| T |
11665574 |
cgactagatagcttgcaatcccttttgtcaaagctccctgtaaagtgagtattcagctggtgtttatcctgattaagaaaggatggtgctattacagcag |
11665475 |
T |
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| Q |
407 |
tgcaatgagtacct |
420 |
Q |
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| T |
11665474 |
tgcaatgaggacct |
11665461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 421 - 466
Target Start/End: Complemental strand, 11664854 - 11664809
Alignment:
| Q |
421 |
attgtatgttcccatcctattttaattgtctttgctaattttttga |
466 |
Q |
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| T |
11664854 |
attgtatgttcccattctattttaattgtctttgctaattttttga |
11664809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 118; Significance: 7e-60; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 463 - 596
Target Start/End: Original strand, 21695025 - 21695158
Alignment:
| Q |
463 |
ttgaaaggctatgatatgttgtaatcttcagatctttcaagtgttgatatgtttgtgcttttgtttgttaaagtatgaaagtttaagttgtttgtgataa |
562 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
21695025 |
ttgaaaagctatgatatgttgtaatcttcagatctttcaagtgttgatatgtttgtgctttcgtttgttaaagtatgaaagtttaagtggtttgtgataa |
21695124 |
T |
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| Q |
563 |
attgataatgccttaagtcgcctattattgagtg |
596 |
Q |
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| T |
21695125 |
actgataatgccttaagtcgcctattattgagtg |
21695158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 307 - 405
Target Start/End: Original strand, 21693201 - 21693299
Alignment:
| Q |
307 |
cgactagatagcttgcaatcccttttgtccaagctccctgtaaagtgagtattcagctggtgtttatcctgattaagaaagaatggtgctattacagca |
405 |
Q |
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| T |
21693201 |
cgactagatagcttgcaatcccttttgtcaaagctccctgtaaagtgagtattcagctgttgtttaccctgattaagaaagaatggtgctattacagca |
21693299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 214 - 281
Target Start/End: Original strand, 21708974 - 21709041
Alignment:
| Q |
214 |
gaaccaggtcatgcttccgcaattgcaaatactcaaactcgttttccttgacaatctcattaggatgt |
281 |
Q |
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| T |
21708974 |
gaaccaggtcatgcttccgcaattgcaaatactcaaactcgttttccttgacaatctcattaggatgt |
21709041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 142 - 292
Target Start/End: Complemental strand, 21713589 - 21713441
Alignment:
| Q |
142 |
caaaagctcctgagctgaaatatatatttggtgaatgtgatgatagacatagttcatctcaccaatataccagaaccaggtcatgcttccgcaattgcaa |
241 |
Q |
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|||||| || ||||||||||||||||||||||||||||||| || |||| ||||||||||||||| || |||||| ||||||| | ||| || || |
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| T |
21713589 |
caaaaggtcatgagctgaaatatatatttggtgaatgtgatcatgaacatcattcatctcaccaata--cctgaaccacaccatgctttctcaactggaa |
21713492 |
T |
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| Q |
242 |
atactcaaactcgttttccttgacaatctcattaggatgtgtcccgaatac |
292 |
Q |
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| T |
21713491 |
gttctcaaactcagttctcttgacaatctcattgggatgtgtcctgaatac |
21713441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 421 - 466
Target Start/End: Original strand, 21693917 - 21693962
Alignment:
| Q |
421 |
attgtatgttcccatcctattttaattgtctttgctaattttttga |
466 |
Q |
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| T |
21693917 |
attgtatgttcccatcctattttaactgtctttgctaattttttga |
21693962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 149 - 292
Target Start/End: Original strand, 21705949 - 21706089
Alignment:
| Q |
149 |
tcctgagctgaaatatatatttggtgaatgtgatgatagacatagttcatctcaccaatataccagaaccaggtcatgcttccgcaattgcaaatactca |
248 |
Q |
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|||||||||||||||||||||||||||||||||| || |||| ||| |||||| | |||||| ||||| |||||||||| ||| || || |||||| |
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| T |
21705949 |
tcctgagctgaaatatatatttggtgaatgtgatcatgaacatcattcttctcac--aaataccacaaccacatcatgcttcctcaactgaaagtactca |
21706046 |
T |
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| Q |
249 |
aactcgttttccttgacaatctcattaggatgtgtcccgaatac |
292 |
Q |
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| T |
21706047 |
atctcgaattccttcacaat-ttattgggatatgtcccgaatac |
21706089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 604 - 642
Target Start/End: Original strand, 21695217 - 21695255
Alignment:
| Q |
604 |
actagattgcaaccttactgcattgtcatgttcctttct |
642 |
Q |
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| T |
21695217 |
actagattgcaaccttactgcattgtcatgttcctttct |
21695255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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