View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11621_low_30 (Length: 248)
Name: NF11621_low_30
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11621_low_30 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 12613512 - 12613753
Alignment:
| Q |
7 |
gaagcagagagaacacatcctaaaacgattcaacctttggaatgctaagaaaacatccacaagagaattggagtgacccaaaagtaggacatttctcgaa |
106 |
Q |
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| T |
12613512 |
gaagcaaagagaacacatcctaaaacgattcaacctttggaatgctaagaaaacatccacaagagaattggagtgacccaaaagtaggacatttctcgaa |
12613611 |
T |
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| Q |
107 |
ttataacacatatgggttcagcccctaccagctcatgggttcttaaagtacttcacattttcaggcttgatgattggggcgttcttgaatagactagggg |
206 |
Q |
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| T |
12613612 |
ttataacacaaatgggttcagcccctaccagctcatgggttcttaaagtacttcacattttcaggcttgatgattggggcgttcttgaatagactagggg |
12613711 |
T |
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| Q |
207 |
atcgacccatatcctagctactcttaaaggataaaaggctac |
248 |
Q |
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| T |
12613712 |
atcgacccatatcctagctactcttaaaggataaaaggctac |
12613753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 7 - 248
Target Start/End: Original strand, 16715116 - 16715357
Alignment:
| Q |
7 |
gaagcagagagaacacatcctaaaacgattcaacctttggaatgctaagaaaacatccacaagagaattggagtgacccaaaagtaggacatttctcgaa |
106 |
Q |
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| T |
16715116 |
gaagcaaagagaacatatcctaaaacaattcaacttttggaatgctacgaaaacatctacaagagaagtgaagtgacctaaaagtaggacatttctcgaa |
16715215 |
T |
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| Q |
107 |
ttataacacatatgggttcagcccctaccagctcatgggttcttaaagtacttcacattttcaggcttgatgattggggcgttcttgaatagactagggg |
206 |
Q |
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| T |
16715216 |
tcataacacatatgggctcggtccctaccagctcatgggttcttaaagtacttcacattttcaggcttgatgcttggggcgttcttaaatagattagtgg |
16715315 |
T |
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| Q |
207 |
atcgacccatatcctagctactcttaaaggataaaaggctac |
248 |
Q |
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| T |
16715316 |
atcgacccatatccttgttactcttaagggataaaaggctac |
16715357 |
T |
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