View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11621_low_34 (Length: 239)
Name: NF11621_low_34
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11621_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 12614013 - 12614231
Alignment:
| Q |
5 |
tttggagaactctcgtatacatttacatatggatttgtacatacacttcggtttggtaggaggatgacgcaagctttttggacaatttgagtctctaaag |
104 |
Q |
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| T |
12614013 |
tttggagaactctcgtatacatttacatatggatttgtacatacacttcggtttggtaggaggatgacacaagctttttggacaatttgagtctctaaag |
12614112 |
T |
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| Q |
105 |
catctagtaaaactagctgtaaggaaaaatgagaataaaatagtgtaacaataataagataaaatattatgtatgaagtaagaaactaaattttaaaagg |
204 |
Q |
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| T |
12614113 |
catctagtaaaactagctgtaaggaaaaatgagaataaaatagtgtaacaataataagataaaatattatgtatgaagtaagaaactaaattttaaaagg |
12614212 |
T |
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| Q |
205 |
gtaaaaagggtttaccttc |
223 |
Q |
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||||||||||||||||||| |
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| T |
12614213 |
gtaaaaagggtttaccttc |
12614231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 16715660 - 16715862
Alignment:
| Q |
21 |
atacatttacatatggatttgtacatacacttcggtttggtaggaggatgacgcaagctttttggacaatttgagtctctaaagcatctagtaaaactag |
120 |
Q |
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||||||||||||||||| | || ||||||||||| |||| ||||| ||||| |||| |||||||||||| |||||||||||||||||||||||| ||| |
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| T |
16715660 |
atacatttacatatggagtggtgcatacacttcgctttgccaggagaatgacacaaggtttttggacaatctgagtctctaaagcatctagtaaacttag |
16715759 |
T |
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| Q |
121 |
ctgtaaggaaaaatgagaataaaatagtgtaacaataataagataaaatattatgtatgaagtaagaaactaaattttaaaagggtaaaaagggtttacc |
220 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||| |
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| T |
16715760 |
ctgtaatgaaaaatgagaataaaatagtgtaacaataataagataaaatattatgtatgaagtaaaaaactaaattttaaaagagtaaaaatggtttacc |
16715859 |
T |
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| Q |
221 |
ttc |
223 |
Q |
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||| |
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| T |
16715860 |
ttc |
16715862 |
T |
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