View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11621_low_38 (Length: 230)
Name: NF11621_low_38
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11621_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 17456394 - 17456594
Alignment:
| Q |
1 |
ccaaatgtcttcaccaacagatacattttgttcaaaagctccttcaggaccatctaagctccataccgccattttttaattgatcaaaccctagat-nnn |
99 |
Q |
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| T |
17456394 |
ccaaatgtcttcaccaacagatacattttgttcaaaagctccttcaggaccatctaagctccataccgccattttttaattgatcaaaccctagataaaa |
17456493 |
T |
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| Q |
100 |
nnnnntaactaacttttttcaacaaaacagaatttatttaggagaagaggacaccaaacctagggtttatccnnnnnnnnaataattttcaaattttgtt |
199 |
Q |
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| T |
17456494 |
aaaaataactaacttttttcaacaaaacagaatttatttaggagaagaggacaccaaacctagggtttatccttttttttaataattttcaaattttgtt |
17456593 |
T |
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| Q |
200 |
c |
200 |
Q |
| |
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| T |
17456594 |
c |
17456594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 17434270 - 17434361
Alignment:
| Q |
2 |
caaatgtcttcaccaacagatacattttgttcaaaagctccttcaggaccatctaagctccataccgccattttttaattgatcaaacccta |
93 |
Q |
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||||||||| |||||| ||||||||||| |||||| |||||||||||||||| | |||||| | ||||||| || ||||||||||||||| |
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| T |
17434270 |
caaatgtctgtaccaactgatacattttgcacaaaaggtccttcaggaccatctgaactccatgctgccatttcttgattgatcaaacccta |
17434361 |
T |
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