View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11621_low_4 (Length: 613)
Name: NF11621_low_4
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11621_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 569; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 14 - 602
Target Start/End: Complemental strand, 4141943 - 4141355
Alignment:
| Q |
14 |
atcacctagttctctatgctagaatatagatgtagtgctatgtcacttgagcataggattatttcccatgaaaggttacatgttacttcttggattatta |
113 |
Q |
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| T |
4141943 |
atcacctagttctctatgctagaatatagatgtagtgctatgtcacttgagcataggattatttcccatgaaaggttacatgttatttcttggattatta |
4141844 |
T |
|
| Q |
114 |
attaattgtcgaatggttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcatacattacatt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4141843 |
attaattgtcgaatggttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcatacgttacatt |
4141744 |
T |
|
| Q |
214 |
tgatatatttcacaattatgcattgcattatatggttctttgtttggttttctatgattctaattatgattttgatgtttttcaaatgcactgtaatatt |
313 |
Q |
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| T |
4141743 |
tgatatatttcacaattatgcattgcattatatggttctttgtttggttttctatgattctaattatgattttgatgtttttcaaatgcactgtaatatt |
4141644 |
T |
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| Q |
314 |
tattttttgcaatgtatgctcaaggatgcacaaattttatataatgtttgctacaaatcttgcatgtacagtatgaattgagataccgcgatggtcgcaa |
413 |
Q |
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| T |
4141643 |
tattttttgcaatgtatgctcaaggatgcacaaatcttatataatgtttgctacaaatcttgcatgtacagtatgaattgagataccgcgatggtcacaa |
4141544 |
T |
|
| Q |
414 |
tgggtatataaagaacgacaaagttataggagtgtagagcaaaatgaattacttatattgaactggttttctaccaacaaaggtagtatagtgtctctag |
513 |
Q |
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| T |
4141543 |
tgggtatataaagaacgacaaagttataggagtgtagagcaaaatgaattacttatattgaactggttttctatcaacaaaggtagtatagtgtctctag |
4141444 |
T |
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| Q |
514 |
agttaactagtgcagatgaataacaagctcattgcatttcaaagaaatactacattttgaataacaatctcattcgcaacgatattctt |
602 |
Q |
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| T |
4141443 |
agttaactagtgcagatgaataacaagctcattgcatttcaaagaaatactacattttgaataacaatctcattcgcaacgatattctt |
4141355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 3754937 - 3755085
Alignment:
| Q |
89 |
ttacatgttacttcttggattattaattaattgtcgaatggtt----ttgcatcttcagaaattgctgtcattttcatttatattatttctttgtta-ca |
183 |
Q |
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| T |
3754937 |
ttacatgttatttcatggattattaattaatggacgaatgaatgatattgcagcttcagaaacttctgtcattttcatttatattatttgtttgttattt |
3755036 |
T |
|
| Q |
184 |
ggtttttgttctctcgtcatacattacatttgatatatttcacaattatgca |
235 |
Q |
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| T |
3755037 |
ggttttttttctc---tcatacattacatttgatatagttcacaattttgca |
3755085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 4157750 - 4157675
Alignment:
| Q |
14 |
atcacctagttctctatgctagaatatagatgtagtgctatgtcacttgagcataggattatttcccatgaaaggttacatg |
95 |
Q |
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| T |
4157750 |
atcacctagttctctat---aggatgtagatgtagtgct--gtcacttgagcataggattatttccca-gaaaggttacatg |
4157675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 3755079 - 3755115
Alignment:
| Q |
318 |
ttttgcaatgtatgctcaaggatgcacaaattttata |
354 |
Q |
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| T |
3755079 |
ttttgcaatgtatgctcaaggatgcagaaattttata |
3755115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 1889395 - 1889345
Alignment:
| Q |
14 |
atcacctagttctctatgctagaatatagatgtagtgctatgtcacttgag |
64 |
Q |
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| T |
1889395 |
atcaccttgttcttaatgctagaatgtagatgtggtgctatgtcacttgag |
1889345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 377
Target Start/End: Complemental strand, 2677807 - 2677757
Alignment:
| Q |
325 |
atgtatgctcaaggatgcacaaattttatataatgtttgctacaaatcttgca |
377 |
Q |
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| T |
2677807 |
atgtatgcttaaggatgcacaaattt--tataatgtttacttcaaatcttgca |
2677757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 450 - 486
Target Start/End: Original strand, 3755121 - 3755157
Alignment:
| Q |
450 |
gagcaaaatgaattacttatattgaactggttttcta |
486 |
Q |
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|||| |||||||||||||||| ||||||||||||||| |
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| T |
3755121 |
gagccaaatgaattacttatactgaactggttttcta |
3755157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 126 - 353
Target Start/End: Original strand, 11082196 - 11082412
Alignment:
| Q |
126 |
atggttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcatacattacatttgatatatttca |
225 |
Q |
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||||||||| | ||||||||||| |||||||||||||||||||||||| ||||| | |||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
11082196 |
atggttttgtagcttcagaaatttctgtcattttcatttatattatttgtttgtcagaggtttttgttctctcatcatacattacatttgatatagttca |
11082295 |
T |
|
| Q |
226 |
caattatgcattgcattatatggttctttgtttggttttctatgattctaattatgattttgatgtttttcaaatgcactgtaatatttattttttgcaa |
325 |
Q |
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| T |
11082296 |
caattatgcattacgttatatgatacttcgttt-aatttctatgattctaa----------gatatttttcaaaggcattgtaattttcattttttgcat |
11082384 |
T |
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| Q |
326 |
tgtatgctcaaggatgcacaaattttat |
353 |
Q |
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||||||||||||| | ||||||| |||| |
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| T |
11082385 |
tgtatgctcaaggttacacaaatattat |
11082412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 1427351 - 1427278
Alignment:
| Q |
130 |
ttttgcatcttcagaaattgctgtcattttcatttatattatttctttgttacaggtttttgttctctcgtcat |
203 |
Q |
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| T |
1427351 |
ttttgcaacttgagaaattgccattattttcatttatattatatgtttgttagaagtttttgttctctcctcat |
1427278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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