View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11621_low_5 (Length: 513)
Name: NF11621_low_5
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11621_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 17 - 500
Target Start/End: Original strand, 21128817 - 21129298
Alignment:
| Q |
17 |
attaagaatgaataaaatttacaactagcattttacattagaaattagaaattcagaaaaactataacaaactgccaaagtttttgttcaggacagaaac |
116 |
Q |
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||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21128817 |
attaagaatgaataaaatt-acaagtagcattttacataagaaattagaaattcagaaaaactataacaaactgccaaagtttttgttcaggacaaaaac |
21128915 |
T |
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| Q |
117 |
gtaacgtgtgtggtctttaagaaattcagaacgacccatcattattttttacgtagttatatacgagaaagaaaccaaacaagctcnnnnnnncaaacat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21128916 |
gtaacgtgtgtggtctttaagaaattcagaacgacccatcattattttttacgtagttatatacgagaaagaaaccaaacaagctcaaaaaa-caaacat |
21129014 |
T |
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| Q |
217 |
ggaaagtggtgttggaacaatgaaccatgaatgcaaagcaacttcaactatcacaattaagggtattttgagtcttttaatggaaagtgttggtgagaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21129015 |
ggaaagtggtgttggaacaatgaaccatgaatgcaaagcaacttcaactatcacaattaagggtattttgagtcttttaatggaaagtgttggtgagaat |
21129114 |
T |
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| Q |
317 |
aatgatgataacagtaagagagttatttctcttggaatgggtgaccctactctttccacatgcttccctaatgctaaggttgctgaagaagctgttgctg |
416 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21129115 |
aatgatgataacagcaagagagttatttctcttggaatgggtgaccctactctttccacatgcttccctaatgctaaggttgctgaagaagctgttgctg |
21129214 |
T |
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| Q |
417 |
atgcactttgctctggaaactttcatggttatgctcctactgctggtcttctccaggctagaaagtaatgtttcccttttccct |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21129215 |
atgcactttgctctggaaactttcatggttatgctcctactgctggtcttctccaggctagaaagtaatgtttcccttttccct |
21129298 |
T |
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