View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11621_low_6 (Length: 498)
Name: NF11621_low_6
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11621_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Original strand, 27205858 - 27206331
Alignment:
| Q |
18 |
aaaagggtattgtaagtagtaatatttggagagattccatcaacaaacatctgtaaataagtcttaaatgccttctccacatgacttcctgtacagtaac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27205858 |
aaaagggtattgtaagtagtaatatttggagagattccatcaacaaacatctgtaaataagtcttaaatgccttctccacgtgacttcctgtacagtaac |
27205957 |
T |
|
| Q |
118 |
tgcgaataagggcattgtaagtaacataatcagctgaaattccacattttaccatttcatcaaggaccacttttgcttttctagtcatccctaatctgca |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27205958 |
cgcggataagggcattgtaagtaacataatcagctgaaattccacgttttaccatttcatcaaggaccacttttgcctttctagtcatccctaatctgca |
27206057 |
T |
|
| Q |
218 |
taatacagtaatcagtgtgttatacacagtcagggtgagtttgaggcccatgtcgacgagtttattatgaatttgtaaaattatgtctgcttttttaaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27206058 |
taatacagtaatcagtgtgttatacacagtcagggtgagtttgaggcccatgtcgatgagtttattatgaatttgtaaaattgtgtctgcttttttaaac |
27206157 |
T |
|
| Q |
318 |
cttgaatatgctttaaccagaaacttgtgagtaattggggttggtacaacccccataaccaacatttcatttaaaacatctgctgctttttgaacgtcgc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27206158 |
cttgaatatgctttaaccagaaacttgtgagtaattggggttggtacaacccccataaccaacatttcatttaaaacatctgctgctttttgaacgtcgc |
27206257 |
T |
|
| Q |
418 |
cagttttacaaagcccgccaatcagaatgttataagtgactgcatttggcattatcccgtagctcttcatctca |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27206258 |
cagttttacaaagcccgccaatcagaatgttataagtgactgcatttggcattatcccgtagctcttcatctca |
27206331 |
T |
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Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 491
Target Start/End: Original strand, 35610296 - 35610769
Alignment:
| Q |
18 |
aaaagggtattgtaagtagtaatatttggagagattccatcaacaaacatctgtaaataagtcttaaatgccttctccacatgacttcctgtacagtaac |
117 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
35610296 |
aaaagggtattgtaagtagtaatatttggagcaattccatcaacaaacatctgtgaataagtcttcaatgccttctccacgtgacttcctgtacagtaac |
35610395 |
T |
|
| Q |
118 |
tgcgaataagggcattgtaagtaacataatcagctgaaattccacattttaccatttcatcaaggaccacttttgcttttctagtcatccctaatctgca |
217 |
Q |
| |
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|||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
35610396 |
cgcgaataagggcgttgtaagtaactaaatcagctgaaattccacgttttaccatttcatcaaggaccacttttgcctttctagtcatccctaacctgca |
35610495 |
T |
|
| Q |
218 |
taatacagtaatcagtgtgttatacacagtcagggtgagtttgaggcccatgtcgacgagtttattatgaatttgtaaaattatgtctgcttttttaaac |
317 |
Q |
| |
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|||||||| || ||||||||||||||||||||| |||||| |||||| | |||| ||||| | |||||||| |||||| |||||||||||| | | |
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| T |
35610496 |
aaatacagtgattagtgtgttatacacagtcaggctgagttcgaggcctgaggcgacaagtttctcgtgaatttgcaaaattttgtctgctttttcactc |
35610595 |
T |
|
| Q |
318 |
cttgaatatgctttaaccagaaacttgtgagtaattggggttggtacaacccccataaccaacatttcatttaaaacatctgctgctttttgaacgtcgc |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||| |||||||||| |||| || | ||||||||| ||| | | |
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| T |
35610596 |
cttgaatatgctttaaccagaaacttgtgagtaattggggttggcacaaactccataactaacatttcatctaaagcactttctgctttttcaactgcac |
35610695 |
T |
|
| Q |
418 |
cagttttacaaagcccgccaatcagaatgttataagtgactgcatttggcattatcccgtagctcttcatctca |
491 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35610696 |
cagttttacaaagcccgccaatcaaaatgttataagtgactgcatttggcattatcccgtagctcttcatctca |
35610769 |
T |
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