View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11621_low_8 (Length: 483)
Name: NF11621_low_8
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11621_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 393
Target Start/End: Complemental strand, 20617169 - 20616781
Alignment:
| Q |
20 |
tttgacacaatgataataagttgtattcttttcagtaacaattagtgaatcaatgaaattacatataaaaatataaattcaaaaatatttttgtaatttc |
119 |
Q |
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| T |
20617169 |
tttgacacagtgataataagttgtattcttttcactaacaattattaaatcaatgaaattacatataaaaaaataaattcaaaaatatttttgtaatttc |
20617070 |
T |
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| Q |
120 |
gatgaatacaccataatataaactactatggtgacatgagatttttctagaacaagcaagtgtaaatactcaaaaagcatgggt---------------a |
204 |
Q |
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| T |
20617069 |
gatgaatacaccataatataaactactatggtgacatgagatttttctagaacaagcaagtgcaaatactcaaaaagcatgggtcatcatcatcatggta |
20616970 |
T |
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| Q |
205 |
actgatgaacacaacaacagttggcaacaaaaagaacacaatggtggtgcaagtgctgatgacactgcttcttttaccttttccttactctcctaaacta |
304 |
Q |
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| T |
20616969 |
actgatgaacacaacaacagttggcaacaaaaagaacacaatggtggtgcaagtgttgatgacattgcttcttttaccttttccttactctgctaaacta |
20616870 |
T |
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| Q |
305 |
aagtgttacaacaaaaacctcctaaatttacattgtgtgttattttgggttatcaattttcttcaatctcaatccactcaactttcacg |
393 |
Q |
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| T |
20616869 |
aagtgttacaacaaaaacctcctaaatttacattgtgtgttattttgggttatcaattttcttcaatctcaatccactcaactttcacg |
20616781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 446 - 476
Target Start/End: Complemental strand, 20616728 - 20616698
Alignment:
| Q |
446 |
cgaatattctgcatactttttgttcatctct |
476 |
Q |
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| T |
20616728 |
cgaatattctgcatactttttgttcatctct |
20616698 |
T |
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