View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11621_low_9 (Length: 474)
Name: NF11621_low_9
Description: NF11621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11621_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 37 - 264
Target Start/End: Original strand, 43619389 - 43619616
Alignment:
| Q |
37 |
aacacatcgacactattaataatttgaagtgtcgagatacatagcacatcacatgttacttgagctcaaggtgattgtgttttctttgtttttgccttct |
136 |
Q |
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| T |
43619389 |
aacacatcgacactattaataatttgaagtgtcgagatacatagcacatcacatgttacttgagctcaaggtgattgtgttttctttgtttttgccttct |
43619488 |
T |
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| Q |
137 |
tgtaggctggaatcccagatggagtgatcaatgtagtacccggatttggagctactgctggtgctgcagtgagctcacacatggacattgatgtagtaag |
236 |
Q |
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| T |
43619489 |
tgtaggctggaatcccagatggagtgatcaatgtagtacccggatttggagctactgctggtgctgcagtgagctcacacatggacattgatgcggtaag |
43619588 |
T |
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| Q |
237 |
cgagatttaaaattgtggtggtaacagt |
264 |
Q |
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| T |
43619589 |
tgagatttaaaattgtggtggtaacagt |
43619616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 257 - 456
Target Start/End: Original strand, 43620223 - 43620425
Alignment:
| Q |
257 |
gtaacagtcacgtcacattttttatgttgtggggaatcgcagtcaaatgtagttgataatcgatgtcactctggctgggagactgggacatcaaaacatg |
356 |
Q |
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| T |
43620223 |
gtaacagtcacgtcacattttttatgttgtggagaatcgcagtcaaatgtagttgataatcgatgtcactctggctgggagactgggacatcaaaacatg |
43620322 |
T |
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| Q |
357 |
gacca---tgatgttgaatatataatattgctttaattttttatgtatgtttaggttagctttactggttcaacacaaactgggcgtgagataatgcaag |
453 |
Q |
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| T |
43620323 |
gaccatattgatgttgaatatataatattgctttaattttttatgtatgtttaggttagctttactggttcaacacaaactgggcgtgagataatgcaag |
43620422 |
T |
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| Q |
454 |
ctg |
456 |
Q |
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||| |
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| T |
43620423 |
ctg |
43620425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 43626809 - 43626905
Alignment:
| Q |
140 |
aggctggaatcccagatggagtgatcaatgtagtacccggatttggagctactgctggtgctgcagtgagctcacacatggacattgatgtagtaag |
236 |
Q |
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| T |
43626809 |
aggctgggatcccaaatggagtgctgaatgtagtacccggatttggtccaactgctggtgctgcaatcagctcacacatggacatagatgttgtaag |
43626905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 140 - 228
Target Start/End: Complemental strand, 32407745 - 32407657
Alignment:
| Q |
140 |
aggctggaatcccagatggagtgatcaatgtagtacccggatttggagctactgctggtgctgcagtgagctcacacatggacattgat |
228 |
Q |
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| T |
32407745 |
aggctggaattccagatggagtgctcaatgtagtacctggatttggtgcaactgcaggagctgcaataagctcacacatggacattgat |
32407657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 32434075 - 32434171
Alignment:
| Q |
139 |
taggctggaatcccagatggagtgatcaatgtagtacccggatttggagctactgctggtgctgcagtgagctcacacatggacattgatgtagtaa |
235 |
Q |
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| T |
32434075 |
taggctggtattccagatggagtgctcaatgtactgccaggatttggttcaactgctggagctgcaataacctcacatatggacattgatgcagtaa |
32434171 |
T |
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