View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11622_high_2 (Length: 822)
Name: NF11622_high_2
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 708; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 708; E-Value: 0
Query Start/End: Original strand, 19 - 808
Target Start/End: Original strand, 3809681 - 3810451
Alignment:
| Q |
19 |
ccattgtcaaaacgatctacctttcgatctctatctcttgctctgaaaattcctaagacatcattgataaggctgcaaaagtccggagttatacgacgcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3809681 |
ccattgtcaaaacgatctacctttcgatctctatctcttgctctgaaaattcctaagacatcattgataaggctgcaaaagtccggagttatacgacgcc |
3809780 |
T |
|
| Q |
119 |
attcaagtacacttaagccatatttaaaagaggaaaatatgattgctcgtttaaggttttgtttgtcaatgctcgaccgtaacagctcgcctcatgatcc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3809781 |
attcaagtacacttaagccatatttaaaagaggaaaatatgattgctcgtttaaggttttgtttgtcaatgctcgaccgtaacagctcgcctcatgatcc |
3809880 |
T |
|
| Q |
219 |
gaagtttacttccatgcacaatactgtgtttatcgatgagaaatggttctatattacaaaaaataaaaccaattactatttgcattcggaagaggaggag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3809881 |
gaagtttacttccatgcacaatactgtgtttatcgatgagaaatggttctatattacaaaaaataaaaccaattactatttgaattcggaagaggaggag |
3809980 |
T |
|
| Q |
319 |
ccacaccgagcatgtcaaagcaaaatttttattggtaagcttatgtttgtagctgcagtggccagacccaggtttgacaacgaaggaaaggagacattct |
418 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3809981 |
ccacaccgaacatgtcaaagcaaaaattttattggtaagcttatgtttgtagctgcagtggccagacccaggtttgacaacgaaggaaaggagacattct |
3810080 |
T |
|
| Q |
419 |
cagggaagattggtatatttccatttgtgtatgaacagccagctagaagaagcagtgtcaacagagctgcagggactatagaaaggaaacctataacttc |
518 |
Q |
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| T |
3810081 |
cagggaagattggtatatttccatttgtgtatgaacagccagctagaagaagcagtgtcaacagagctgcagggactatagaaaggaaacctataacttc |
3810180 |
T |
|
| Q |
519 |
tgtgacaagagaggtgaataaaactttcatgatgagcaaaatcttaccagcccttaagaattgctggccaatagaagatgtagggaagacaattttcatt |
618 |
Q |
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| T |
3810181 |
tgtgacaagagaggtgaataaaactttcatgatgagcaaaatcttaccagcccttaagaattgctggccaatagaagatgtagggaagacaattttcatt |
3810280 |
T |
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| Q |
619 |
caacaagacaatgcaaagtctcatatttctaaagatgatcctgatttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctc |
718 |
Q |
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| T |
3810281 |
caacaagagaatgcaaagtctcatatttctaaagatgatcctgatttttgtcgagcagcaagtgaagatgggtttg-------------------acctc |
3810361 |
T |
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| Q |
719 |
cgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattcagtctttacagcagaaagaatcaatgaagtcaattgatg |
808 |
Q |
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| T |
3810362 |
cgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattcagtatttacagcagaaagaatcaatgaagtcaattgatg |
3810451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 683 - 770
Target Start/End: Original strand, 1329564 - 1329651
Alignment:
| Q |
683 |
aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca |
770 |
Q |
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| T |
1329564 |
aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca |
1329651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 664 - 752
Target Start/End: Original strand, 45489216 - 45489304
Alignment:
| Q |
664 |
ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttggg |
752 |
Q |
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|||||| ||||||| ||||| ||||||||||||||||||||| |||||||| || || || |||||||||||||| ||||| ||||| |
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| T |
45489216 |
ttttgtagagcagcttctgaaggtgggtttgacattcgattgatatgtcaaccacctaactctcccgatttgaatgttttggatttggg |
45489304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 683 - 770
Target Start/End: Complemental strand, 42539990 - 42539903
Alignment:
| Q |
683 |
aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca |
770 |
Q |
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|||||||||| ||||||||| |||| ||||||||||| ||||| || || | |||||||| ||| | ||||| |||| ||||||||| |
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| T |
42539990 |
aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca |
42539903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 664 - 740
Target Start/End: Original strand, 8187133 - 8187209
Alignment:
| Q |
664 |
ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgt |
740 |
Q |
| |
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|||||| ||||||| ||||| ||||||||||||||||||||| ||| ||| || ||||| |||||||||||||| |
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| T |
8187133 |
ttttgtagagcagcttttgaaggtgggtttgacattcgattgatatgttaacgacctaattctcccgatttgaatgt |
8187209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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