View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11622_high_22 (Length: 363)
Name: NF11622_high_22
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 14771896 - 14772215
Alignment:
| Q |
1 |
gtttctttgttattcttccttgacgcattcttccttgcagtcgcagaaccatcccaatcgtcacggcaactccaactgcaatacaggtgtataatggatt |
100 |
Q |
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| T |
14771896 |
gtttctttgttattcttccttgacgcattcttccttgcagtcgcagaaccatcccaatcgtcatggcaactccaactgcaatacaggtgtataatggatt |
14771995 |
T |
|
| Q |
101 |
cagttaccataatagatttaacaactttaatatacaaagttaaaaggaacttaacgaacaattaacaagttaacctggaaaatgatatacctgaagcata |
200 |
Q |
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| T |
14771996 |
aagttaccataatagatttaacaactttaatatacaaagttaaaaggaacttaacgaacaattaacaagttaacctggaaaatgatatacctgaagcata |
14772095 |
T |
|
| Q |
201 |
cttaagagatcgacctatgagtctgtggtactgcttgcaggttgttgatcagcttcagtttttggaatgcttaaatgaggtttcacagcagcagttacaa |
300 |
Q |
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| T |
14772096 |
cataagagatcgacctatgagtctgtggtactgcttgcaggttgtt--tcagcttcagtttttggaatgcttaaatgaggttgctcagcagcagttacaa |
14772193 |
T |
|
| Q |
301 |
ttcggtgaaatatattgttcga |
322 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
14772194 |
ttcggtgaaatatattgttcga |
14772215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 102 - 316
Target Start/End: Original strand, 15014113 - 15014327
Alignment:
| Q |
102 |
agttaccataatagatttaacaacttta-atatacaaagttaaaaggaacttaacgaacaat-taacaagttaacctggaaaatgatatacctgaagcat |
199 |
Q |
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| T |
15014113 |
agttagcatgatagattgaaaaacttaatatatacaaagtcaaaagcaatttaatgaagaaactaacaagtaaacctaaaaaataatatacctgaaacaa |
15014212 |
T |
|
| Q |
200 |
acttaagagatcgacctatgagtctgtggtactgcttgcaggttgttgatcagcttcagtttttggaatgcttaaatgaggtttcacagcagcagttaca |
299 |
Q |
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| T |
15014213 |
acataagagatcgatctatgagtctgtggtactgcttgcatgttttt--ctaccttcagtttttggaatgtttaaatgagggtgctctgcagccgttaca |
15014310 |
T |
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| Q |
300 |
attcggtgaaatatatt |
316 |
Q |
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||| ||||||||||||| |
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| T |
15014311 |
atttggtgaaatatatt |
15014327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 302
Target Start/End: Original strand, 17878747 - 17878933
Alignment:
| Q |
114 |
agatttaacaactttaatatacaaagttaaaaggaacttaacgaacaattaacaagttaacctggaaaatgatatacctgaagcatacttaagagatcga |
213 |
Q |
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||||| || |||| ||||||||||||| ||||||||||||| |||||| |||||||| || ||| ||||||||||||| || ||| |||||||| |
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| T |
17878747 |
agattgaaaaactctaatatacaaagtcaaaaggaacttaatgaacaactaacaagtaaaatctaaaattgatatacctgaaacaaactgaagagatcct |
17878846 |
T |
|
| Q |
214 |
cctatgagtctgtggtactgcttgcaggttgttgatcagcttcagtttttggaatgcttaaatgaggtttcacagcagcagttacaatt |
302 |
Q |
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|||||| || ||| ||| |||| || || ||||||||||| |||||||||||||||||| | | |||||||| |||||||| |
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| T |
17878847 |
tttatgagcctatggaacttcttgtgtctttttc--cagcttcagttactggaatgcttaaatgagggtgctcagcagcacttacaatt |
17878933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 15046258 - 15046327
Alignment:
| Q |
250 |
cagcttcagtttttggaatgcttaaatgaggtttcacagcagcagttacaattcggtgaaatatattgtt |
319 |
Q |
| |
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|||||||||||| ||||| ||||||||||| | |||||||| ||||||||||||| |||| |||||| |
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| T |
15046258 |
cagcttcagtttccggaatacttaaatgaggaggctcagcagcacttacaattcggtggaatacattgtt |
15046327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 36878948 - 36878894
Alignment:
| Q |
250 |
cagcttcagtttttggaatgcttaaatgaggtttcacagcagcagttacaattcg |
304 |
Q |
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|||||||||||| |||||||||||||||||| | | | ||||||||||||||||| |
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| T |
36878948 |
cagcttcagtttctggaatgcttaaatgaggatgctcggcagcagttacaattcg |
36878894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 51365227 - 51365277
Alignment:
| Q |
253 |
cttcagtttttggaatgcttaaatgaggtttcacagcagcagttacaattc |
303 |
Q |
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|||||||||| ||||||||||||||||| | | ||||||| |||||||||| |
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| T |
51365227 |
cttcagttttaggaatgcttaaatgagggtgctcagcagcggttacaattc |
51365277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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