View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11622_high_23 (Length: 359)
Name: NF11622_high_23
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 9 - 342
Target Start/End: Complemental strand, 941358 - 941025
Alignment:
| Q |
9 |
agcacagacagtctttggattaggcgtgtcctgatgtcggacacgcgtccgtatcggtgcattacaaggtatgatcgattttcagtctcgtatttctaaa |
108 |
Q |
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| T |
941358 |
agcacggacagtcttcggattaggtgtgtcctgatgtcggacacgcgtccgtatcggtgctttacaaggtatgatcgattttcagtctcatatttctaaa |
941259 |
T |
|
| Q |
109 |
gaaaaatatcgaaactttacgcaaactatataaaaaatatgcttgccaaccaacctttagaacaccgacaaaatcggtatactcagcaggctcaggaaac |
208 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
941258 |
gaaaaatatcgaaactttacacaaactatttaaaaaatatgcttgccaaccaacctttagaacaccgacaaaatcggtatactcagcaggctcaggaaac |
941159 |
T |
|
| Q |
209 |
tcatcatccggatcaaaaacattagcccatctaacattcttattcaactcataacactgtttccctctctcagaacccacaacatcaatctgaacaccag |
308 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
941158 |
tcatcgtccggatcaaaaacattagcccatctaacattcttattcaactcataacactgtttccctctctcagaacccacaacatcaacctgaacaccag |
941059 |
T |
|
| Q |
309 |
ggtacctatccttaatcaactgaatcattggaaa |
342 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
941058 |
ggtacctatccttaatcaactgaatcattggaaa |
941025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 55
Target Start/End: Original strand, 2625983 - 2626011
Alignment:
| Q |
27 |
attaggcgtgtcctgatgtcggacacgcg |
55 |
Q |
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| T |
2625983 |
attaggcgtgtcctgatgtcggacacgcg |
2626011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 30982813 - 30982857
Alignment:
| Q |
9 |
agcacagacagtctttggattaggcgtgtcctgatgtcggacacg |
53 |
Q |
| |
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|
| T |
30982813 |
agcacggacactctttggattaggcgtgtcccggtgtcggacacg |
30982857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 36450700 - 36450748
Alignment:
| Q |
9 |
agcacagacagtctttggattaggcgtgtcctgatgtcggacacgcgtc |
57 |
Q |
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|||||||||| || | ||||||||||||||||| ||||||||||||||| |
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| T |
36450700 |
agcacagacactcctcggattaggcgtgtcctggtgtcggacacgcgtc |
36450748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 8343440 - 8343396
Alignment:
| Q |
9 |
agcacagacagtctttggattaggcgtgtcctgatgtcggacacg |
53 |
Q |
| |
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|||||||||| |||| ||||||||||||||| | ||||||||||| |
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|
| T |
8343440 |
agcacagacactcttcggattaggcgtgtcccggtgtcggacacg |
8343396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 8071021 - 8071064
Alignment:
| Q |
10 |
gcacagacagtctttggattaggcgtgtcctgatgtcggacacg |
53 |
Q |
| |
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| T |
8071021 |
gcacatacactctttggattaggcgtgtcctggtgtcggacacg |
8071064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 53
Target Start/End: Original strand, 29763151 - 29763179
Alignment:
| Q |
25 |
ggattaggcgtgtcctgatgtcggacacg |
53 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
29763151 |
ggattaggcgtgtcctgatgtcggacacg |
29763179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 8842664 - 8842700
Alignment:
| Q |
13 |
cagacagtctttggattaggcgtgtcctgatgtcgga |
49 |
Q |
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|||||| |||||| ||||||||||||||||||||||| |
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| T |
8842664 |
cagacactctttgaattaggcgtgtcctgatgtcgga |
8842700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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