View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11622_high_29 (Length: 310)
Name: NF11622_high_29
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_high_29 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 44073397 - 44073699
Alignment:
| Q |
1 |
tgtaaattgaaaattcagtgttaataaatcatgaggcaggctcttctatttgatttgattatgtaagttttgatatagtggaatgcatgctcaaatgatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44073397 |
tgtaaattgaaaattcagtgttaataaataatgaggcaggctcttctatttgatttgattatgtaagttttgatatagtggaatgcatgctcaaatgatg |
44073496 |
T |
|
| Q |
101 |
nnnnnnnaatgaaaaagatctagcagttgtaacaattgaaatagcttcatttccttctctttttcattgattattattggttttaatcatctactcttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44073497 |
tttttttaatgaaaaagatctagcagttgtaacaattaaaatagcttcatttccttctctttttcattgattattattggttttaatcatctaatcttct |
44073596 |
T |
|
| Q |
201 |
tcctcatgtttggaataatcggagcaggaggatacttatctatgggaagatgatgatgacaggtaatttataatttgctcttttctgtgctgtattcatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
44073597 |
tcctcatgtttggaataatcggagcaggaggatacttatctatgggaagatgatgatgacaggtaatttataatttactcttttatgtgctgtattcatc |
44073696 |
T |
|
| Q |
301 |
tct |
303 |
Q |
| |
|
||| |
|
|
| T |
44073697 |
tct |
44073699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 44282597 - 44282294
Alignment:
| Q |
1 |
tgtaaattgaaaattcagtgttaataaatcatgaggcaggctcttctatttgatttgattatgtaagttttgatatagtg--gaatgcatgctcaaatga |
98 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||| |
|
|
| T |
44282597 |
tgtaaattgaaaattcaatgttaataaataatgaggcaggctcttctatttgatttgattatgtatgttttgatatagtgtggaatgtatgctcaaatga |
44282498 |
T |
|
| Q |
99 |
tgnnnnnnnaatgaaaaagatctagcagttgtaacaattgaaatagcttcatttccttctctttttcattgattattattggttttaatcatctactctt |
198 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44282497 |
tgttttttta-tgaaaaagatctagcagttgtaacaattgaaatagcttcatttccttctctttttcattgattattattggttttaatcatctactctt |
44282399 |
T |
|
| Q |
199 |
cttcctcatgtttggaataatcggagcaggaggatacttatctatgggaagatgatgatgacaggtaatttataatttgctcttttctgtgctgtattca |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44282398 |
cttcctcatgtttggaataatcggagcaggaggatacttatctatgggaagatgatgatgacaggtaatttataatttactcttttctgtgctgtattca |
44282299 |
T |
|
| Q |
299 |
tctct |
303 |
Q |
| |
|
||||| |
|
|
| T |
44282298 |
tctct |
44282294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University