View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11622_high_30 (Length: 308)
Name: NF11622_high_30
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_high_30 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 29943241 - 29942944
Alignment:
| Q |
11 |
agatgaataagtagggtatctaaaatttgaactctgacccttacacatattaattactattcgagatgtcatctttttaaataaattttaattactcgga |
110 |
Q |
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| T |
29943241 |
agatgaataagtagagtatctgaaatttgaactccgatccttacatatattaattacaattcgagatgtcatttttttaaataaattttaattactcgaa |
29943142 |
T |
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| Q |
111 |
tgattaatttatgtgattgcgcgcgacatatattggtattatttacaacaagaatatgtattattaacaagaatattcttgaagtacaatgtttaaacac |
210 |
Q |
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| T |
29943141 |
tgattaatttatatggtagcgcgcgacatatattggtattatttacaacaagaatatgtattattaacaagaatattcttgaagtacaatgtttaaacac |
29943042 |
T |
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| Q |
211 |
taggcaccaaacacgatcatgtttattaacacaaccggaccatgtttctcgctgccagtccaattttcaacttgttttctttcaaatagacaatgagc |
308 |
Q |
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| T |
29943041 |
taggcaccaaacacgatcatgtttattaacacaaccggaccatgtttcttgctgccagtccaattttccacttgttttcttccaaatagacaatgagc |
29942944 |
T |
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