View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11622_high_31 (Length: 285)

Name: NF11622_high_31
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11622_high_31
NF11622_high_31
[»] chr2 (12 HSPs)
chr2 (167-285)||(35681918-35682036)
chr2 (172-285)||(31635999-31636112)
chr2 (172-254)||(27952637-27952719)
chr2 (195-283)||(280297-280385)
chr2 (167-237)||(2165636-2165706)
chr2 (183-285)||(22011096-22011198)
chr2 (171-245)||(23457389-23457462)
chr2 (176-230)||(33053187-33053241)
chr2 (16-61)||(35682142-35682187)
chr2 (172-248)||(36648624-36648700)
chr2 (169-271)||(32162225-32162326)
chr2 (172-248)||(36614845-36614921)
[»] chr5 (5 HSPs)
chr5 (167-285)||(21845197-21845315)
chr5 (176-285)||(18252132-18252241)
chr5 (195-237)||(19677630-19677672)
chr5 (167-201)||(21849278-21849312)
chr5 (167-201)||(21857192-21857226)
[»] chr7 (8 HSPs)
chr7 (172-285)||(4303121-4303234)
chr7 (176-281)||(11001090-11001195)
chr7 (193-284)||(1369529-1369620)
chr7 (173-249)||(1786424-1786500)
chr7 (176-285)||(8915437-8915545)
chr7 (172-249)||(13882995-13883071)
chr7 (173-249)||(1217473-1217548)
chr7 (167-285)||(11228434-11228551)
[»] chr1 (8 HSPs)
chr1 (168-281)||(10926912-10927026)
chr1 (167-285)||(10927816-10927934)
chr1 (172-285)||(13441901-13442012)
chr1 (167-285)||(23988937-23989055)
chr1 (182-254)||(8966022-8966094)
chr1 (172-285)||(31915249-31915365)
chr1 (171-285)||(40805571-40805685)
chr1 (184-247)||(31522584-31522647)
[»] chr8 (8 HSPs)
chr8 (167-284)||(23573249-23573365)
chr8 (167-237)||(22922157-22922227)
chr8 (172-245)||(26377776-26377849)
chr8 (172-247)||(22512360-22512435)
chr8 (169-283)||(2688887-2688999)
chr8 (172-236)||(2188719-2188783)
chr8 (195-246)||(24577813-24577864)
chr8 (180-223)||(37193064-37193107)
[»] chr6 (15 HSPs)
chr6 (167-285)||(18203149-18203265)
chr6 (169-285)||(12881737-12881852)
chr6 (167-237)||(30049629-30049699)
chr6 (167-237)||(30051916-30051986)
chr6 (172-285)||(22888967-22889080)
chr6 (170-237)||(3541959-3542026)
chr6 (172-285)||(22873524-22873637)
chr6 (172-285)||(22910510-22910623)
chr6 (176-285)||(34374051-34374160)
chr6 (167-285)||(12778664-12778780)
chr6 (172-217)||(11194398-11194443)
chr6 (193-249)||(8047661-8047717)
chr6 (167-203)||(18726879-18726915)
chr6 (183-247)||(32361109-32361173)
chr6 (198-236)||(18720031-18720069)
[»] chr4 (7 HSPs)
chr4 (167-285)||(22716326-22716444)
chr4 (167-285)||(22988773-22988891)
chr4 (169-285)||(10494636-10494752)
chr4 (167-237)||(13085398-13085471)
chr4 (170-228)||(6659640-6659697)
chr4 (195-285)||(7635002-7635092)
chr4 (187-249)||(9260313-9260375)
[»] chr3 (6 HSPs)
chr3 (172-242)||(3064051-3064121)
chr3 (172-283)||(365863-365973)
chr3 (184-248)||(8536655-8536719)
chr3 (172-248)||(2472969-2473045)
chr3 (172-208)||(43304270-43304306)
chr3 (190-235)||(24516698-24516743)
[»] scaffold0110 (1 HSPs)
scaffold0110 (167-237)||(45923-45993)
[»] scaffold0054 (3 HSPs)
scaffold0054 (172-285)||(10363-10476)
scaffold0054 (184-248)||(49063-49127)
scaffold0054 (189-228)||(37484-37523)
[»] scaffold0024 (2 HSPs)
scaffold0024 (176-285)||(145446-145555)
scaffold0024 (185-285)||(144177-144280)


Alignment Details
Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 167 - 285
Target Start/End: Complemental strand, 35682036 - 35681918
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  35682036 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccaagttctctttctgataaagagctttctatgcatgtt 35681937  T
Q  267 gactccttcaatgaacaag 285  Q
    |||||||||||||||||||    
T  35681936 gactccttcaatgaacaag 35681918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 172 - 285
Target Start/End: Complemental strand, 31636112 - 31635999
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 271  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||  |||||||||| ||  ||||||| | || | ||||||||||||||    
T  31636112 aaattactaataaaaccctcctacatcagtctcctccacctctgaagaactcgaatccgagttctcatttagataaagagtttcccatgcatgttgactc 31636013  T
Q  272 cttcaatgaacaag 285  Q
    || |||||||||||    
T  31636012 ctccaatgaacaag 31635999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 172 - 254
Target Start/End: Original strand, 27952637 - 27952719
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctt 254  Q
    |||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  27952637 aaattattaataaaaccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagctt 27952719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 195 - 283
Target Start/End: Original strand, 280297 - 280385
Alignment:
Q  195 catcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttcaatgaaca 283  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||   ||||||||||| |||| |||||||||    
T  280297 catcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagagcttcacatgcatgttgaatcctccaatgaaca 280385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 2165706 - 2165636
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 237  Q
    |||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2165706 ctataaaattactaaggaaactctcctacatcagtctcctccacctctgaagaactcgaccccgagttctc 2165636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 183 - 285
Target Start/End: Complemental strand, 22011198 - 22011096
Alignment:
Q  183 aaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttct-atgcatgttgactccttcaatgaa 281  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||| |||| ||||||   ||||| ||| |||||||||||||| |||||    
T  22011198 aaaaccctcctgcatcactctcctccacctctaaagaactcgaccctgagttctcattctaataaag-aatttctcatgtatgttgactccttcgatgaa 22011100  T
Q  282 caag 285  Q
    ||||    
T  22011099 caag 22011096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 245
Target Start/End: Complemental strand, 23457462 - 23457389
Alignment:
Q  171 aaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgat 245  Q
    |||||||||||||||||| |||| |||||||| ||||||||||||||||||||   ||||||||||| |||||||    
T  23457462 aaaattactaagaaaacc-tcctacatcagtcgcctccacctctgaagaactctgacccgagttctcattctgat 23457389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 33053241 - 33053187
Alignment:
Q  176 tactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccg 230  Q
    ||||||| ||||||| || ||||||||||||||||||||||||||||||||||||    
T  33053241 tactaaggaaacccttctacatcagtctcctccacctctgaagaactcgaccccg 33053187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 35682187 - 35682142
Alignment:
Q  16 atgaatgaaactgaggctccaactgaaataaatactataatgttct 61  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  35682187 atgaatgaaactgaggctcaaactgaaataaatactataatgttct 35682142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 36648700 - 36648624
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaa 248  Q
    ||||||||||| |||||||||| ||| ||||||||||| || ||||||||||||| || ||||||  ||||||||||    
T  36648700 aaattactaaggaaaccctcctacatgagtctcctccatctatgaagaactcgactcccagttcttgttctgataaa 36648624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 169 - 271
Target Start/End: Original strand, 32162225 - 32162326
Alignment:
Q  169 ataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttga 268  Q
    |||||||| ||||| ||| |||| | ||| ||||||||||| ||||||| ||||| |||  |||||||| ||||||||||| |||| | |||||||||||    
T  32162225 ataaaatt-ctaaggaaatcctcttacattagtctcctccatctctgaaaaactcaaccttgagttctcattctgataaagagcttcccatgcatgttga 32162323  T
Q  269 ctc 271  Q
    |||    
T  32162324 ctc 32162326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 36614921 - 36614845
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaa 248  Q
    ||||||||||| |||||||||| | | ||||||||||| || ||||||||||||| ||||||| |  ||||||||||    
T  36614921 aaattactaaggaaaccctcctacgtgagtctcctccatctatgaagaactcgactccgagtttttgttctgataaa 36614845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 9e-42; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 167 - 285
Target Start/End: Original strand, 21845197 - 21845315
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 266  Q
    ||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| ||||||||||| |||| | |||||||||    
T  21845197 ctataaaattactaagaaaaccctcttgcatcagtctgttccacctctgaagaactcgaccccgagttctcattctgataaagagcttcccatgcatgtt 21845296  T
Q  267 gactccttcaatgaacaag 285  Q
    ||||||| |||||||||||    
T  21845297 gactcctccaatgaacaag 21845315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 176 - 285
Target Start/End: Complemental strand, 18252241 - 18252132
Alignment:
Q  176 tactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttc 275  Q
    ||||||| ||||||||||||||||| |||||| |||||||||||||| |||||||||||||| || |||||||  |||||| |||||||| ||||||| |    
T  18252241 tactaaggaaaccctcctgcatcagcctcctctacctctgaagaacttgaccccgagttctcattatgataaacagctttccatgcatgtggactcctcc 18252142  T
Q  276 aatgaacaag 285  Q
    |||| |||||    
T  18252141 aatggacaag 18252132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 237
Target Start/End: Original strand, 19677630 - 19677672
Alignment:
Q  195 catcagtctcctccacctctgaagaactcgaccccgagttctc 237  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  19677630 catcagtctcctccacctctgaagaactcgaccccgagttctc 19677672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 21849278 - 21849312
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagt 201  Q
    ||||||||||||||||||||||||| |||||||||    
T  21849278 ctataaaattactaagaaaaccctcgtgcatcagt 21849312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 201
Target Start/End: Original strand, 21857192 - 21857226
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagt 201  Q
    ||||||||||||||||||||||||| |||||||||    
T  21857192 ctataaaattactaagaaaaccctcgtgcatcagt 21857226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 172 - 285
Target Start/End: Complemental strand, 4303234 - 4303121
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 271  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||| | |||||||| |||||    
T  4303234 aaattactaataaaaccctcctacatcagtctcctccacctctgaagaactcgatcccgagttctcattttgataaagagcttcccatgcatgtcgactc 4303135  T
Q  272 cttcaatgaacaag 285  Q
    || |||||||||||    
T  4303134 ctccaatgaacaag 4303121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 176 - 281
Target Start/End: Original strand, 11001090 - 11001195
Alignment:
Q  176 tactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttc 275  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||| | ||||| || |||||||| |||| | ||||||||| |||||| |    
T  11001090 tactaaggaaaccctcctacatcagtctcctccacctctgaagaactcgaccccaaattctcattgtgataaagagcttcccatgcatgttaactcctcc 11001189  T
Q  276 aatgaa 281  Q
    ||||||    
T  11001190 aatgaa 11001195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 193 - 284
Target Start/End: Complemental strand, 1369620 - 1369529
Alignment:
Q  193 tgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttcaatgaacaa 284  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||  ||||||||||| |||| | ||| |||||||||||| ||||||||||    
T  1369620 tgcatgagtctcctccacctctgaagaactcgagcccgagttcttattctgataaagagcttcccatgaatgttgactcctccaatgaacaa 1369529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 1786500 - 1786424
Alignment:
Q  173 aattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaag 249  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| ||||||||| || ||||||||    
T  1786500 aattactaagaaaaccttcctacatgagtctcctccacctctgaagaactcgacctcgagttctcattttgataaag 1786424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 285
Target Start/End: Original strand, 8915437 - 8915545
Alignment:
Q  176 tactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttc 275  Q
    ||||||| |||||||||| ||||||||||||||| |||||||||||| |||||||| ||||| |||| |||||  || | | |||||||||||||||| |    
T  8915437 tactaaggaaaccctcctacatcagtctcctccatctctgaagaactagaccccgaattctcattctaataaaaagc-tcccatgcatgttgactcctcc 8915535  T
Q  276 aatgaacaag 285  Q
     |||||||||    
T  8915536 gatgaacaag 8915545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 13882995 - 13883071
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaag 249  Q
    |||||||||| |||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| |||| ||||||    
T  13882995 aaattactaataaaaccctcctgcatcagtctcgtccacctctaaagaactcga-cccgagttctcattctaataaag 13883071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 173 - 249
Target Start/End: Original strand, 1217473 - 1217548
Alignment:
Q  173 aattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaag 249  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||| | || ||||||||    
T  1217473 aattactaataaaaccctcctgcatcagtctcctccacctttgaagaactcga-cccgagttcacgttttgataaag 1217548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 285
Target Start/End: Complemental strand, 11228551 - 11228434
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 266  Q
    |||||||||||||| | ||||| |||| ||||||||| |||| ||||| ||||||| | |||||||||||| |||| ||||||  ||| | ||||||| |    
T  11228551 ctataaaattactatggaaaccatcctacatcagtcttctcc-cctcttaagaacttgcccccgagttctcattctaataaagaacttcccatgcatgat 11228453  T
Q  267 gactccttcaatgaacaag 285  Q
    |||||||  ||||||||||    
T  11228452 gactcctataatgaacaag 11228434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 168 - 281
Target Start/End: Complemental strand, 10927026 - 10926912
Alignment:
Q  168 tataaaattactaa-gaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 266  Q
    |||||||||||||| ||||| | |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||| | |||||||||    
T  10927026 tataaaattactaatgaaaatcatcctacatcagtctcctccacctctgaagaactcgaccccgagttctcattctgataaagaacttcccatgcatgtt 10926927  T
Q  267 gactccttcaatgaa 281  Q
    ||||||| |||||||    
T  10926926 gactcctccaatgaa 10926912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 167 - 285
Target Start/End: Complemental strand, 10927934 - 10927816
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttct-atgcatgt 265  Q
    |||||||||||||||| |||||||||| || ||||||||||||| |||||||||||||||||||||||||| |||| |||||| | ||||| ||||| ||    
T  10927934 ctataaaattactaaggaaaccctcctacaacagtctcctccacttctgaagaactcgaccccgagttctcattctaataaagag-tttctcatgcaagt 10927836  T
Q  266 tgactccttcaatgaacaag 285  Q
    |||||| | |||| ||||||    
T  10927835 tgactcttacaataaacaag 10927816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 172 - 285
Target Start/End: Original strand, 13441901 - 13442012
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 271  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||| ||||   | ||||||| ||||||||||| |||| | ||||||||||||||    
T  13441901 aaattactaacaaaacccttctgcatcagtctcctccacctctgaagaattcga--tcaagttctcattctgataaagagcttcccatgcatgttgactc 13441998  T
Q  272 cttcaatgaacaag 285  Q
    || |||||| ||||    
T  13441999 ctccaatgagcaag 13442012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 167 - 285
Target Start/End: Complemental strand, 23989055 - 23988937
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 266  Q
    |||| ||||||||||| |||||||||| ||| |||||||| ||||||||||||||||||||  |||||||| || || ||||| |||| |  ||||||||    
T  23989055 ctatgaaattactaaggaaaccctcctacattagtctcctacacctctgaagaactcgaccttgagttctcgttttggtaaagagcttcccttgcatgtt 23988956  T
Q  267 gactccttcaatgaacaag 285  Q
     ||||||||||||| ||||    
T  23988955 aactccttcaatgagcaag 23988937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 254
Target Start/End: Original strand, 8966022 - 8966094
Alignment:
Q  182 gaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctt 254  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||    
T  8966022 gaaaaccttcctacatcagtctcctccacctctgaagaactcgaccctgagttctcattctgataaagagctt 8966094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 285
Target Start/End: Complemental strand, 31915365 - 31915249
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctcc---acctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgca-tgttg 267  Q
    |||||||||| ||||||||| ||||||||||||||||   ||||||||||||||| ||||||||||||| |||| || ||| | |||| || || |||||    
T  31915365 aaattactaataaaaccctcatgcatcagtctcctcctccacctctgaagaactcaaccccgagttctcgttctaat-aagagttttccattcattgttg 31915267  T
Q  268 actccttcaatgaacaag 285  Q
    |||||| |||||||||||    
T  31915266 actcctccaatgaacaag 31915249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 285
Target Start/End: Complemental strand, 40805685 - 40805571
Alignment:
Q  171 aaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgact 270  Q
    ||||||| |||| ||||  |||| |||||||||||||||||| | ||||| |||||||||||||||  ||||||||| | | ||   ||||||| |||||    
T  40805685 aaaattaataaggaaactatcctacatcagtctcctccacctttaaagaagtcgaccccgagttcttgttctgataaggagtttcacatgcatgatgact 40805586  T
Q  271 ccttcaatgaacaag 285  Q
    ||| | |||||||||    
T  40805585 cctccgatgaacaag 40805571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 31522647 - 31522584
Alignment:
Q  184 aaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataa 247  Q
    |||||||||| |||||| | | |||||||||||||||||||||  ||||||||| |||||||||    
T  31522647 aaaccctcctacatcagccccttccacctctgaagaactcgacttcgagttctcgttctgataa 31522584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 167 - 284
Target Start/End: Complemental strand, 23573365 - 23573249
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 266  Q
    ||||||||||||||||||| |||| || ||| |||||||||||||||||||||||||||||| ||||| || || |||||||| |||| | |||||||||    
T  23573365 ctataaaattactaagaaa-cccttctacattagtctcctccacctctgaagaactcgacccggagttttcattttgataaagagcttcccatgcatgtt 23573267  T
Q  267 gactccttcaatgaacaa 284  Q
    ||||||| ||||||||||    
T  23573266 gactcctccaatgaacaa 23573249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 22922157 - 22922227
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 237  Q
    |||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22922157 ctataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctc 22922227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 26377849 - 26377776
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgat 245  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| |||||||    
T  26377849 aaattactaagaaaaccctcctacatcagtctcctccacctttgaagaactcgaccccaagttctcattctgat 26377776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 22512360 - 22512435
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataa 247  Q
    |||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||    
T  22512360 aaattactaataaaactctcctgcatcagtctcctccacctctaaagaactcgaccccgagttcttattctgataa 22512435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 283
Target Start/End: Complemental strand, 2688999 - 2688887
Alignment:
Q  169 ataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttga 268  Q
    |||||| ||||||  |||||||||| ||| |||||||||||||| |||||||||||| | ||||||||| |||| ||  || | || | |||||||||||    
T  2688999 ataaaaatactaaagaaaccctcctacatgagtctcctccacctatgaagaactcgatcacgagttctcattctaat--agagtttcccatgcatgttga 2688902  T
Q  269 ctccttcaatgaaca 283  Q
    ||||| |||||||||    
T  2688901 ctcctccaatgaaca 2688887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 2188719 - 2188783
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttct 236  Q
    ||||||||||| ||||| |||| | | ||||||||||| || ||||||||||||| |||||||||    
T  2188719 aaattactaaggaaaccttcctacgtgagtctcctccatctatgaagaactcgactccgagttct 2188783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 24577813 - 24577864
Alignment:
Q  195 catcagtctcctccacctctgaagaactcgaccccgagttctctttctgata 246  Q
    |||||||||||||||| ||||||||| ||||||  |||||||| ||||||||    
T  24577813 catcagtctcctccacttctgaagaattcgaccttgagttctccttctgata 24577864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 37193107 - 37193064
Alignment:
Q  180 aagaaaaccctcctgcatcagtctcctccacctctgaagaactc 223  Q
    |||||||||||||||||||||| | ||||| |||||||||||||    
T  37193107 aagaaaaccctcctgcatcagtttactccatctctgaagaactc 37193064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 167 - 285
Target Start/End: Complemental strand, 18203265 - 18203149
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 266  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| || | |||||| | |||| |||||||||    
T  18203265 ctataaaattactgagaaa-ccctcctacatcagtctcctccacctctgaagaactcga-cccgagttctcattttaataaagagttttccatgcatgtt 18203168  T
Q  267 gactccttcaatgaacaag 285  Q
    |||||||  ||||||||||    
T  18203167 gactcctcgaatgaacaag 18203149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 169 - 285
Target Start/End: Complemental strand, 12881852 - 12881737
Alignment:
Q  169 ataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttga 268  Q
    |||||||||||||| |||||||||| ||||||||||||||||||  |||||||||||||||||| |||| ||| ||| |||  ||| | |||||||||||    
T  12881852 ataaaattactaaggaaaccctcctacatcagtctcctccacctaagaagaactcgaccccgagctctcattccgat-aagaacttcccatgcatgttga 12881754  T
Q  269 ctccttcaatgaacaag 285  Q
    || ||||||||||||||    
T  12881753 cttcttcaatgaacaag 12881737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 30049699 - 30049629
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 237  Q
    |||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30049699 ctataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctc 30049629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 30051986 - 30051916
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 237  Q
    |||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30051986 ctataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctc 30051916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 172 - 285
Target Start/End: Complemental strand, 22889080 - 22888967
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 271  Q
    |||||||||||||||||||||| |||||||||| ||||||||| | ||| | |||||| ||||||| || |||||||| |||| | |||||| |||||||    
T  22889080 aaattactaagaaaaccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgcatattgactc 22888981  T
Q  272 cttcaatgaacaag 285  Q
    || |||||||||||    
T  22888980 ctccaatgaacaag 22888967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 3542026 - 3541959
Alignment:
Q  170 taaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 237  Q
    ||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3542026 taaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctc 3541959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 172 - 285
Target Start/End: Complemental strand, 22873637 - 22873524
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 271  Q
    |||||| ||||||||||||||| |||||||||| ||||||||| | ||| |||| ||| ||||||| || |||||||| |||| | |||||| |||||||    
T  22873637 aaattattaagaaaaccctcctacatcagtctcatccacctctaaggaaatcgatcccaagttctcattatgataaagagcttcccatgcatattgactc 22873538  T
Q  272 cttcaatgaacaag 285  Q
    || |||||||||||    
T  22873537 ctccaatgaacaag 22873524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 172 - 285
Target Start/End: Complemental strand, 22910623 - 22910510
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 271  Q
    |||||||||||||||||||||| |||||||||| ||||||||| | ||| | |||||| ||||||| || |||||||| |||| | ||| || |||||||    
T  22910623 aaattactaagaaaaccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgtatattgactc 22910524  T
Q  272 cttcaatgaacaag 285  Q
    || |||||||||||    
T  22910523 ctccaatgaacaag 22910510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 176 - 285
Target Start/End: Original strand, 34374051 - 34374160
Alignment:
Q  176 tactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttc 275  Q
    ||||||| |||||||| | ||| |||||||||||| |||||||||||| ||||||||||||| || |||||||| | || | |||||||||||||| | |    
T  34374051 tactaaggaaaccctcttacattagtctcctccacatctgaagaactccaccccgagttctcattttgataaagagattcccatgcatgttgactcttcc 34374150  T
Q  276 aatgaacaag 285  Q
    ||||||||||    
T  34374151 aatgaacaag 34374160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 167 - 285
Target Start/End: Original strand, 12778664 - 12778780
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 266  Q
    ||||| || ||||| |||||||||| | |||||||||||||||||||||||||||| |||||| | ||||| |||||||  || | || || ||||||||    
T  12778664 ctatagaaatactatgaaaaccctcttacatcagtctcctccacctctgaagaacttgaccccaaattctcattctgat--agagtttcctttgcatgtt 12778761  T
Q  267 gactccttcaatgaacaag 285  Q
    ||||||| |||||||||||    
T  12778762 gactcctccaatgaacaag 12778780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 11194443 - 11194398
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaa 217  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||    
T  11194443 aaattactaagaaaactctcctacatcagtctcctccacctctgaa 11194398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 8047661 - 8047717
Alignment:
Q  193 tgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaag 249  Q
    |||||| ||||||||||||||||||||||| |||||||||||||  |||| ||||||    
T  8047661 tgcatcggtctcctccacctctgaagaacttgaccccgagttctaattctaataaag 8047717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 18726915 - 18726879
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtct 203  Q
    ||||||||||||||| |||||||||||||||||||||    
T  18726915 ctataaaattactaaaaaaaccctcctgcatcagtct 18726879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 32361173 - 32361109
Alignment:
Q  183 aaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataa 247  Q
    ||||||||||| ||| ||||| |||||||||| || ||||||||| ||||||||| || ||||||    
T  32361173 aaaaccctcctacattagtcttctccacctctaaaaaactcgacctcgagttctcattatgataa 32361109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 236
Target Start/End: Complemental strand, 18720069 - 18720031
Alignment:
Q  198 cagtctcctccacctctgaagaactcgaccccgagttct 236  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  18720069 cagtctcctccacctttgaagaactcgaccccgaattct 18720031  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 167 - 285
Target Start/End: Complemental strand, 22716444 - 22716326
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 266  Q
    |||| |||||||||| ||||| |  |||||||||||||||||| |||| |||||||||||||||||||||| || |||||||| |||| | || ||||||    
T  22716444 ctattaaattactaataaaactcaactgcatcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgtt 22716345  T
Q  267 gactccttcaatgaacaag 285  Q
    ||||||| |||||||||||    
T  22716344 gactcctccaatgaacaag 22716326  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 167 - 285
Target Start/End: Original strand, 22988773 - 22988891
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgtt 266  Q
    |||| |||||||||| ||||| |  |||||||||||||||||| |||| |||||||||||||||||||||| || |||||||| |||| | || ||||||    
T  22988773 ctattaaattactaataaaactcaactgcatcagtctcctccagctctaaagaactcgaccccgagttctcattttgataaagagcttcccattcatgtt 22988872  T
Q  267 gactccttcaatgaacaag 285  Q
    ||||||| |||||||||||    
T  22988873 gactcctccaatgaacaag 22988891  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 285
Target Start/End: Complemental strand, 10494752 - 10494636
Alignment:
Q  169 ataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttga 268  Q
    |||||| ||||||| |||||||| | ||||||||| ||| || |||||||||||||||| | ||||||  | ||||||||  |||| | |||||||| ||    
T  10494752 ataaaaatactaaggaaaccctcatacatcagtcttctctacttctgaagaactcgacctcaagttctgatcctgataaatagcttcccatgcatgtcga 10494653  T
Q  269 ctccttcaatgaacaag 285  Q
    ||||| |||||||||||    
T  10494652 ctcctccaatgaacaag 10494636  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 13085398 - 13085471
Alignment:
Q  167 ctataaaattactaagaaaa---ccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 237  Q
    ||||||||||||||| ||||   ||||||| |||||||||| |||| |||||||||||||||||||||||||||    
T  13085398 ctataaaattactaaaaaaaacaccctcctacatcagtctcttccatctctgaagaactcgaccccgagttctc 13085471  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 6659640 - 6659697
Alignment:
Q  170 taaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccc 228  Q
    |||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  6659640 taaaattactaagaaa-ccctcctacatcagtctcctctacctctgaagaactcgaccc 6659697  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 285
Target Start/End: Complemental strand, 7635092 - 7635002
Alignment:
Q  195 catcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactccttcaatgaacaag 285  Q
    ||||||||||||||| ||||||||||||||||||| | ||||| |||| |||||  |||  | |||||||||||||||| | |||||||||    
T  7635092 catcagtctcctccatctctgaagaactcgaccccaaattctcattctaataaaaagctccccatgcatgttgactcctccgatgaacaag 7635002  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 9260375 - 9260313
Alignment:
Q  187 ccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaag 249  Q
    ||||| ||||||| ||||||| || ||| |||||||||||||||||||||  || ||||||||    
T  9260375 ccctcatgcatcaatctcctctacgtctaaagaactcgaccccgagttcttattttgataaag 9260313  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 3064051 - 3064121
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttct 242  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3064051 aaattactaacaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctcgttct 3064121  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 172 - 283
Target Start/End: Original strand, 365863 - 365973
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 271  Q
    |||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| ||||||||| || |||||||| || ||| ||| ||||||||||    
T  365863 aaattactaataaaatcctcctgcatcaatctcctccacctctgaagaactcgacctcgagttctcgttttgataaagagc-ttccatgtatgttgactc 365961  T
Q  272 cttcaatgaaca 283  Q
     | |||||||||    
T  365962 ttccaatgaaca 365973  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 248
Target Start/End: Original strand, 8536655 - 8536719
Alignment:
Q  184 aaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaa 248  Q
    |||||||||| |||||| ||| ||||||||| ||||||||||| |||||||||  ||||||||||    
T  8536655 aaaccctcctacatcagcctcttccacctctaaagaactcgactccgagttcttattctgataaa 8536719  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 248
Target Start/End: Original strand, 2472969 - 2473045
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaa 248  Q
    |||||||||| |||||| |  || |||||  |||||||| | | |||||||||||||||||||||| ||||||||||    
T  2472969 aaattactaataaaacctttgtgtatcagcttcctccacttttaaagaactcgaccccgagttctcattctgataaa 2473045  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 43304270 - 43304306
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctcc 208  Q
    |||||||||| ||||||||||||||||||||||||||    
T  43304270 aaattactaataaaaccctcctgcatcagtctcctcc 43304306  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 24516698 - 24516743
Alignment:
Q  190 tcctgcatcagtctcctccacctctgaagaactcgaccccgagttc 235  Q
    |||| ||||| |||||||||| || |||||||||||||||||||||    
T  24516698 tcctacatcaatctcctccacttcagaagaactcgaccccgagttc 24516743  T

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Target: scaffold0110 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 167 - 237
Target Start/End: Original strand, 45923 - 45993
Alignment:
Q  167 ctataaaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctc 237  Q
    |||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45923 ctataaaattactaaggaagccctcctacatcagtctcctccacctctgaagaactcgaccccgagttctc 45993  T

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Target: scaffold0054 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 172 - 285
Target Start/End: Complemental strand, 10476 - 10363
Alignment:
Q  172 aaattactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgcatgttgactc 271  Q
    |||||||||||||||||||||| |||||||||| ||||||||| | ||| | |||||| ||||||| || |||||||| |||| | ||| || |||||||    
T  10476 aaattactaagaaaaccctcctacatcagtctcatccacctctaaggaaatagaccccaagttctcattatgataaagagcttcccatgaatattgactc 10377  T
Q  272 cttcaatgaacaag 285  Q
    || |||||||||||    
T  10376 ctccaatgaacaag 10363  T

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Target: scaffold0054; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 49127 - 49063
Alignment:
Q  184 aaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaa 248  Q
    |||| ||||| ||||||||||||||||||||||||||||| ||||||||||||  ||||||||||    
T  49127 aaactctcctacatcagtctcctccacctctgaagaactcaaccccgagttcttattctgataaa 49063  T

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Target: scaffold0054; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 228
Target Start/End: Complemental strand, 37523 - 37484
Alignment:
Q  189 ctcctgcatcagtctcctccacctctgaagaactcgaccc 228  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  37523 ctcctacatcagtctcctccacctctgaagaactcgaccc 37484  T

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Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 285
Target Start/End: Complemental strand, 145555 - 145446
Alignment:
Q  176 tactaagaaaaccctcctgcatcagtctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgca-tgttgactcctt 274  Q
    |||||| ||||||||||| ||||||||||||||||||| |||||||| || |||||||| |  ||||||||||| | | ||  | || ||||||||||||    
T  145555 tactaataaaaccctcctacatcagtctcctccacctcagaagaacttga-cccgagttattattctgataaagagttgtccgttcattgttgactcctt 145457  T
Q  275 caatgaacaag 285  Q
    |||||||||||    
T  145456 caatgaacaag 145446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 285
Target Start/End: Original strand, 144177 - 144280
Alignment:
Q  185 aaccctcctgcatcagt---ctcctccacctctgaagaactcgaccccgagttctctttctgataaagcgctttctatgca-tgttgactccttcaatga 280  Q
    |||||||||||||||||   |||||||| |||||||||||| || ||||||||||  ||||||||||| | | || || || ||| ||||||||| ||||    
T  144177 aaccctcctgcatcagtctcctcctccatctctgaagaacttga-cccgagttcttattctgataaagagttgtccattcattgtcgactccttcgatga 144275  T
Q  281 acaag 285  Q
    |||||    
T  144276 acaag 144280  T

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