View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11622_high_48 (Length: 228)
Name: NF11622_high_48
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_high_48 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 29434514 - 29434741
Alignment:
| Q |
1 |
aaaaattgattcaagaaattaaataattatttaagtcagcaatctgagttttctataagcacttaattaaattgtgcatccaaacaagttctatgacata |
100 |
Q |
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| T |
29434514 |
aaaaattgattcaagaaattaaataaatatttaagtcagcaatctgagttttctataagcacttaattaaattgtgcatccaaacaagttctatgacata |
29434613 |
T |
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| Q |
101 |
agtactagtgtaaatttttggaaaagcctctgaaaatagcttaggttaagtttttaaatcattttcagc-tttttcacaagttcttccagatagctcatt |
199 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
29434614 |
agtactagtgtaaatttttggaaaagcatctgaaaatagcttaggttaagtttttaaaacattttcagcttttttcacaagttcttccagatagctcatt |
29434713 |
T |
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| Q |
200 |
gtcatacgctataactcttggcatatgt |
227 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
29434714 |
gtcatacgctataactcttggcatatgt |
29434741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 226
Target Start/End: Original strand, 29467786 - 29467923
Alignment:
| Q |
91 |
ctatgacataagtactagtgtaaatttttggaaaagcctctgaaaatagcttaggttaagtttttaaatcattttcagct--ttttcacaagttcttcca |
188 |
Q |
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||||| |||||| ||| || ||| | |||| || ||||||||||||||||||| | ||||| | | || |||||||| | |||||| ||| |||| || |
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| T |
29467786 |
ctatgccataagcacttgtataagtctttgcaagagcctctgaaaatagcttatgctaagtctaaatattattttcagttcattttcataagctctttca |
29467885 |
T |
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| Q |
189 |
gatagctcattgtcatacgctataactcttggcatatg |
226 |
Q |
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||||||||| ||||||| | ||||||| || ||||||| |
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| T |
29467886 |
gatagctcagtgtcataagttataacttttagcatatg |
29467923 |
T |
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