View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11622_high_51 (Length: 222)
Name: NF11622_high_51
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_high_51 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 44073120 - 44072919
Alignment:
| Q |
1 |
aacctttgcacctccaaaccattcaaaattatagtcatatgccagttcagttccaataggaatatcttccagtgaaaatattccaactcttatttccccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44073120 |
aacctttgcacctccaaaccattcaaaattatagtcatatgccagttcagttccaataggaatatcttccagtgcaaatattccaactcttatttccccc |
44073021 |
T |
|
| Q |
101 |
atgacattccattttcttgtctcacagtttggttgactgctaacataaaagcattcagttgatgtcaaaccttgggtagtgggaaataggaggataacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44073020 |
atgacattccattttcttgtctcacagtttggttgactgctaacataaaagcattcagttgatgtcaaaccttgggcagtgggaaataggaggataacaa |
44072921 |
T |
|
| Q |
201 |
aa |
202 |
Q |
| |
|
|| |
|
|
| T |
44072920 |
aa |
44072919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 44282875 - 44283076
Alignment:
| Q |
1 |
aacctttgcacctccaaaccattcaaaattatagtcatatgccagttcagttccaataggaatatcttccagtgaaaatattccaactcttatttccccc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
44282875 |
aacctttgcacctccaaaccattcaaaattatagtcatatgccagttcagttccaataggaatattttccagtgcaaatattccaactcttatttccccc |
44282974 |
T |
|
| Q |
101 |
atgacattccattttcttgtctcacagtttggttgactgctaacataaaagcattcagttgatgtcaaaccttgggtagtgggaaataggaggataacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44282975 |
atgacattccattttcttgtctcacagtttggttgactgcaaacataaaagcattcagttgatgtcaaaccttgggcagtgggaaataggaggataacaa |
44283074 |
T |
|
| Q |
201 |
aa |
202 |
Q |
| |
|
|| |
|
|
| T |
44283075 |
aa |
44283076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University