View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11622_high_6 (Length: 510)
Name: NF11622_high_6
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 14 - 487
Target Start/End: Complemental strand, 34754359 - 34753884
Alignment:
| Q |
14 |
gaacaagaggtaagattcaagtacagataat--aactcaatagattcatgagagaaaggtactaacgcgcagagcgtcgatcgtcatagcaccaaatagt |
111 |
Q |
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| T |
34754359 |
gaacaagaggtaagattcaagtacagataatttaactcaatagattcatgggagaaaggtactaacgcgcagagcgtcgatcgtcatagcaccaaatagt |
34754260 |
T |
|
| Q |
112 |
ggagcaaattcagcatcttgttgtatccggcgccactggttgcgccccggatacagctccctcgcttcaaccagcctgttattctcttccacagtccaga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34754259 |
ggagcaaattcagcatcttgttgtatccggcgccactggttgcgccccggatacagctccctcgcttcaaccagcctgttattctcttccgcagtccaga |
34754160 |
T |
|
| Q |
212 |
aatgttgaggcaatggatgaactgctagttcaacattattaacaattggggcagcagcaccctgtaggactagtctcctatgctttgactgtaaagaaaa |
311 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34754159 |
aatgttgaggcaatggatgaactgctaattcaacattattaacaattggggcagcagcaccctgtaggactagtctcctatgctttgactgtaaagaaaa |
34754060 |
T |
|
| Q |
312 |
cacataaaataaccaactattaattaaaagaaggtttctaagtgcaaaagaacgacaacttaatagccctcgctataaacgacaataatttaccaggact |
411 |
Q |
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||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34754059 |
cacataaaataacaaactattatataaaagaaggtttctaagtgcaaaagaacgacaacttaatagccctcgctataaacgacaataatttaccaggact |
34753960 |
T |
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| Q |
412 |
ggtgagttgtaagcaattggtttatgattaggtaataattcaactgaaaagagaagcagccacaatatagtctagc |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34753959 |
ggtgagttgtaagcaattggtttatgattaggtaataattcaactgaaaagagaagcagccacaatatagtctagc |
34753884 |
T |
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