View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11622_low_10 (Length: 474)
Name: NF11622_low_10
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 27 - 455
Target Start/End: Original strand, 11786155 - 11786588
Alignment:
| Q |
27 |
ttagtattgtagaattatctccttaacaaaaagtattgtagcattatcactttattattataaaagttattcatgatgaaagacttaagttatgcaaggg |
126 |
Q |
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| T |
11786155 |
ttagtattgtagaattatctccttaacaaaa-gtattgtagcattatcactctataactataaaagttactcagaccgaaagatttaagttacgcaaggg |
11786253 |
T |
|
| Q |
127 |
tacttttgtctttttagttgggagtga---atatttgttgcgagaagagcaattttcttaggattatgtaacatgcatagagaagagtgnnnnnnnn--c |
221 |
Q |
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|| ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
11786254 |
tatttttgtcttttcagttgggagtgagaaatatttgttgcaagaagagcaattttcttaggaatatgtaacatgcatagagaagagtgttttttttttc |
11786353 |
T |
|
| Q |
222 |
atctgataagataaacaattccagatatttgtactttaatggcatcccctccatccatggaacatcccaaagcatctaacgtagtttcttctccattccc |
321 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| || |
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| T |
11786354 |
atctgataagatgaacaattccagatatttgtactttaatggcatcccctccatccatggaacatcccaaagtatctaacgtaatttcttctccatttcc |
11786453 |
T |
|
| Q |
322 |
aatctctcttcttagacttttcagagaccaattcgacgtaactccccacaccactatctctaaagtatctacatctttccttcatgctgaac-aaatctc |
420 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
11786454 |
aatctctcttcttagacttttcgaagaccaattcgacgtaactccccacaccactatctctaaagtatctacatctttccttcatgctgcacaaaatctc |
11786553 |
T |
|
| Q |
421 |
ccatattaatgcggatatttactcaccaaaactct |
455 |
Q |
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| T |
11786554 |
ccatattaatgcggatatttactcaccaaaactct |
11786588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 27 - 455
Target Start/End: Original strand, 11798322 - 11798755
Alignment:
| Q |
27 |
ttagtattgtagaattatctccttaacaaaaagtattgtagcattatcactttattattataaaagttattcatgatgaaagacttaagttatgcaaggg |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | ||||||||||| ||| |||||| |||||||| ||||||| |
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| T |
11798322 |
ttagtattgtagaattatctccttaacaaaa-gtattgtagcattatcactctataactataaaagttactcagaccgaaagatttaagttacgcaaggg |
11798420 |
T |
|
| Q |
127 |
tacttttgtctttttagttgggagtga---atatttgttgcgagaagagcaattttcttaggattatgtaacatgcatagagaagagtgnnnnnnnn--c |
221 |
Q |
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|| ||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
11798421 |
tatttttgtcttttcagttgggagtgagaaatatttgttgcaagaagagcaattttcttaggaatatgtaacatgcatagagaagagtgttttttttttc |
11798520 |
T |
|
| Q |
222 |
atctgataagataaacaattccagatatttgtactttaatggcatcccctccatccatggaacatcccaaagcatctaacgtagtttcttctccattccc |
321 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| || |
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| T |
11798521 |
atctgataagatgaacaattccagatatttgtactttaatggcatcccctccatccatggaacatcccaaagtatctaacgtaatttcttctccatttcc |
11798620 |
T |
|
| Q |
322 |
aatctctcttcttagacttttcagagaccaattcgacgtaactccccacaccactatctctaaagtatctacatctttccttcatgctgaac-aaatctc |
420 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
11798621 |
aatctctcttcttagacttttcgaagaccaattcgacgtaactccccacaccactatctctaaagtatctacatctttccttcatgctgcacaaaatctc |
11798720 |
T |
|
| Q |
421 |
ccatattaatgcggatatttactcaccaaaactct |
455 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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|
| T |
11798721 |
ccatattaatgcggatatttactcaccaaaactct |
11798755 |
T |
|
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