View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11622_low_12 (Length: 448)
Name: NF11622_low_12
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 430
Target Start/End: Original strand, 47651165 - 47651576
Alignment:
| Q |
19 |
ggcaagttgatgacgatataatttcgaatcaaaattcggaaatggaacaaggtgtgttccgtctggatgatcctgaaccgaattctaatacattcggatc |
118 |
Q |
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| T |
47651165 |
ggcaagttgatgacgatataatttcgaatcaaaattcggaaatggaacaaggtgtgttccgtcgggatgatcctgaaccgaattcgaatacattcggatc |
47651264 |
T |
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| Q |
119 |
cgattcagaaggagaacatgaaagggaatttgatatacagtgtgcggttggaattacggaggaggttttgacttttgcaatgaatattgctatgcatcct |
218 |
Q |
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| T |
47651265 |
cgattcagaaggagaacatgaaagggaatttgatatacagtgtgcggttggaattacggaggaggttttgacttttgcaatgaatattgctatgcatcct |
47651364 |
T |
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| Q |
219 |
gaaacttggttggattttccaattgatgaggaagatgataacgacggtaatcattcaatctcattacatcttcaaatattttaaatttttaaattgcttc |
318 |
Q |
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| T |
47651365 |
gaaacttggttggattttccaattgatgaggaagatgataacgacggtaatcattcaatctcattacatcttcaaatattttaaatttttaaattgcttc |
47651464 |
T |
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| Q |
319 |
taattgtatacattgttgaaggttacttatacctttcataacttaggattgttggttttacatgaattttgattaaatgtgttttttattgtagattttg |
418 |
Q |
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| T |
47651465 |
taattgtattcattgttgaaggttacttatacctttcataacttaggattgttggttttacatgaattttgattaaatgtgttttttattgtagattttg |
47651564 |
T |
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| Q |
419 |
aaatgtccgagg |
430 |
Q |
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| T |
47651565 |
aaatgtctgagg |
47651576 |
T |
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