View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11622_low_13 (Length: 448)
Name: NF11622_low_13
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_low_13 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 438
Target Start/End: Original strand, 42892478 - 42892896
Alignment:
| Q |
19 |
aggtggctgcacgtgctgctgctgctcctcctcttcctcatatgtctgttgtgttgcatggaaagtttgattccaaaatgaggttcaattttaatgatct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42892478 |
aggtggctgcacgtgctgctgctgctcctcctcttcctcatatgtctgttgtgttgcatggaaagtttgattccaaaatgaggttcaattttaatgatct |
42892577 |
T |
|
| Q |
119 |
ttagtgcatcatttttagcttttatatttctagcatagtcgacgtctatttgttttgtgagaaatcggttccataaactttgtttgtatttattttcagt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42892578 |
ttagtgcatcatttttagcttttatatttctagcatagtcaacgtctatttgttttgtgagaaatcggttccataaactttgtttgtatttattttcagt |
42892677 |
T |
|
| Q |
219 |
tgctttgccccgaaagtaccatctaataggagttactaccttacttgttctcctatcattcgatcttctgcactacaaattacagcaacattgctggcaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42892678 |
tgctttgccccgaaagtaccatctaataggagttactaccttacttgttctcctatcattcgatcttctgcactacaaattacagcaacattgctggcaa |
42892777 |
T |
|
| Q |
319 |
cagctggtgaaaatatgtcatttcctcgtaagttttaatctatccaattattagtgttattctttattcatttgcccaacatctctaatatttgctgttt |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42892778 |
cagctggtgaaaatatgtcatttcctcgtaagttttaatctatcc-attattagtgttattctttattcatttgcccaacatctctaatatttgctgttt |
42892876 |
T |
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| Q |
419 |
tgtgtcatttagctcctttg |
438 |
Q |
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|||||||||||||||||||| |
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| T |
42892877 |
tgtgtcatttagctcctttg |
42892896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 28908626 - 28908839
Alignment:
| Q |
19 |
aggtggctgcacgtgctgctgctgctcctcctcttcctca---tatgtctgttgtgttgcatggaaagtttgattccaaaatgaggttcaattttaatga |
115 |
Q |
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||||||||||||||||||||| ||||||||||||||||| | || ||| |||||||||||||||||||||| ||||| ||||||||| ||| ||| |
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| T |
28908626 |
aggtggctgcacgtgctgctgttgctcctcctcttcctccccgtctgcctgcggtgttgcatggaaagtttgattgcaaaacgaggttcaaattttatgt |
28908725 |
T |
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| Q |
116 |
tctttagtgcatcatttttagcttttatatttctagcatagtcgacgtctatttgttttgtgagaaatcggttccataaactttgtttgtatttattttc |
215 |
Q |
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|||| ||||||||||||||| | ||||||||| ||| ||| ||||||||||||| | |||||| |||| || ||| |||||||||||||||||| |
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| T |
28908726 |
cctttcctgcatcatttttagcatatatatttctgttatacgcgatgtctatttgttttttcagaaataggtttcaaaaatattgtttgtatttattttc |
28908825 |
T |
|
| Q |
216 |
agttgctttgcccc |
229 |
Q |
| |
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| T |
28908826 |
aactgctttgcccc |
28908839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 28921811 - 28921893
Alignment:
| Q |
32 |
tgctgctgctgctcctcctcttcctcatatgtctgttgtgttgcatggaaagtttgattccaaaatgaggttcaattttaatg |
114 |
Q |
| |
|
|||||||||||||||||||| |||| | |||||| ||||||||||||||||||||||| |||| ||||||||| |||||| |
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| T |
28921811 |
tgctgctgctgctcctcctcctccttgtctgtctgctgtgttgcatggaaagtttgattggaaaacaaggttcaatattaatg |
28921893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 361
Target Start/End: Original strand, 28921974 - 28922155
Alignment:
| Q |
186 |
gttccataaactttgtttgtatttattttcagttgctttgccccgaaagtaccatctaataggagtt---actaccttacttgttctcctatcattcgat |
282 |
Q |
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|||||||||||| |||| |||||||||||||| |||||| |||| ||||| ||||| || || || || |||| ||||| | |||||||||| || |
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| T |
28921974 |
gttccataaactatgttggtatttattttcagctgctttaccccaaaagtgacatctgatgtgaattttaacgcccttgcttgtgcacctatcattccat |
28922073 |
T |
|
| Q |
283 |
cttctgcactacaaattacagcaacattgctggcaacagctggtgaaaata---tgtcatttcctcgtaagttttaatctat |
361 |
Q |
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|| | ||| |||||||| |||||||||||| ||||||| |||||| |||| | ||||||||| |||||||| ||||||| |
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| T |
28922074 |
ctccggcagtacaaatttcagcaacattgccagcaacagttggtgagaataatctatcatttcctggtaagtttcaatctat |
28922155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 400 - 440
Target Start/End: Original strand, 28922212 - 28922252
Alignment:
| Q |
400 |
tctctaatatttgctgttttgtgtcatttagctcctttgct |
440 |
Q |
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||||||| ||||||||||||||||||||||||||| |||| |
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| T |
28922212 |
tctctaaattttgctgttttgtgtcatttagctcctctgct |
28922252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 257 - 353
Target Start/End: Complemental strand, 112506 - 112410
Alignment:
| Q |
257 |
ccttacttgttctcctatcattcgatcttctgcactacaaattacagcaacattgctggcaacagctggtgaaaatatgtcatttcctcgtaagttt |
353 |
Q |
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||||||||||||||| | ||||| |||| | ||||| |||||| ||||| ||| |||| ||||||||||||||||| ||||||||||| |||||||| |
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| T |
112506 |
ccttacttgttctcccaacattccatctccggcactccaaatttcagcatcatcgctgacaacagctggtgaaaatttgtcatttcctagtaagttt |
112410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 257 - 353
Target Start/End: Original strand, 9325693 - 9325789
Alignment:
| Q |
257 |
ccttacttgttctcctatcattcgatcttctgcactacaaattacagcaacattgctggcaacagctggtgaaaatatgtcatttcctcgtaagttt |
353 |
Q |
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||||||||||||||| | ||||| |||| | ||||| |||||| ||||| ||| |||| |||||||| |||||||| ||||||||||| |||||||| |
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| T |
9325693 |
ccttacttgttctcccaacattccatctccggcactccaaatttcagcatcatcgctgacaacagcttgtgaaaatttgtcatttcctagtaagttt |
9325789 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 258 - 353
Target Start/End: Complemental strand, 20461952 - 20461857
Alignment:
| Q |
258 |
cttacttgttctcctatcattcgatcttctgcactacaaattacagcaacattgctggcaacagctggtgaaaatatgtcatttcctcgtaagttt |
353 |
Q |
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|||||||||||||| | ||||| |||| | ||||| |||||| ||||| ||| |||| |||||||| |||||||| ||||||||||| |||||||| |
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|
| T |
20461952 |
cttacttgttctcccaacattccatctccggcactccaaatttcagcatcatcgctgacaacagctcgtgaaaatttgtcatttcctagtaagttt |
20461857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 258 - 353
Target Start/End: Complemental strand, 20464333 - 20464238
Alignment:
| Q |
258 |
cttacttgttctcctatcattcgatcttctgcactacaaattacagcaacattgctggcaacagctggtgaaaatatgtcatttcctcgtaagttt |
353 |
Q |
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|||||||||||||| | ||||| |||| | ||||| |||||| ||||| ||| |||| |||||||| |||||||| ||||||||||| |||||||| |
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| T |
20464333 |
cttacttgttctcccaacattccatctccggcactccaaatttcagcatcatcgctgacaacagctcgtgaaaatttgtcatttcctagtaagttt |
20464238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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