View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11622_low_14 (Length: 439)
Name: NF11622_low_14
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_low_14 |
 | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 20 - 411
Target Start/End: Complemental strand, 37845231 - 37844840
Alignment:
| Q |
20 |
gatgtctaggtgcactatgggtgggatacaataataatgcagatgcgctaatccttgagcaattccaacagcaatcttaagccggtcactccatataaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37845231 |
gatgtctaggtgcactatgggtgggatacaataataatgcagatgcgctaatccttgagcaattccaacagcaatcttaagccggtcactccatataaag |
37845132 |
T |
|
| Q |
120 |
ggtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagtgtg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37845131 |
ggtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagtgtg |
37845032 |
T |
|
| Q |
220 |
cgtatttcatcaaattttgatgcttaaacattgcaaggacttcaatttcattgaacatgacacttagttgcattttattgttccttccaaattcaaactt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37845031 |
cgtatttcatcaaattttgatgcttaaacattgcaaggacttcaatttcattgaacatgacacttagttgcattttattgttccttccaaattcaaactt |
37844932 |
T |
|
| Q |
320 |
ctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttaggttctctg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37844931 |
ctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttaggttctctg |
37844840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 21 - 411
Target Start/End: Complemental strand, 37843363 - 37842973
Alignment:
| Q |
21 |
atgtctaggtgcactatgggtgggatacaataataatgcagatgcgctaatccttgagcaattccaacagcaatcttaagccggtcactccatataaagg |
120 |
Q |
| |
|
|||||| |||||||||| |||| | ||||| || |||||||| |||| ||||| ||||||||||||| |||||||||||||||||||||| ||||| |
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|
| T |
37843363 |
atgtctcggtgcactatcggtgtgtcacaatcattatgcagatatgctagtccttcagcaattccaacaacaatcttaagccggtcactccacgtaaaga |
37843264 |
T |
|
| Q |
121 |
gtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagtgtgc |
220 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||| ||| |||||||||||||| || |
|
|
| T |
37843263 |
gtggtggaggtttcttctcatgcaaaatatcatgaaggcttccatttttcatgaattcatacaagactaaaccatagtcctttccaatccagtagtcagc |
37843164 |
T |
|
| Q |
221 |
gtatttcatcaaattttgatgcttaaacattgcaaggacttcaatttcattgaacatgacacttagttgcattttattgttccttccaaattcaaacttc |
320 |
Q |
| |
|
|||||| |||| ||| |||||||| ||||| |||| ||||||||||||||| |||| | || ||| || || |||| ||| |||||||||||| |
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|
| T |
37843163 |
gtatttgatcacgtttcgatgcttatacattccaagcacttcaatttcattgcacatcatacgtagccgctttaccctgttgcttgtgaattcaaacttc |
37843064 |
T |
|
| Q |
321 |
tttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttaggttctctg |
411 |
Q |
| |
|
|||| |||| || | ||||||||||| | | ||||||||||| ||| ||||||||| || ||||||||||| |||||| |||||||||||| |
|
|
| T |
37843063 |
tttacagcataaacctgttgaccaagcaaagctttgtacacaataccatgtgctcctcttccaataatatattgatcacttaggttctctg |
37842973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 20 - 391
Target Start/End: Complemental strand, 37832248 - 37831877
Alignment:
| Q |
20 |
gatgtctaggtgcactatgggtgggatacaataataatgcagatgcgctaatccttgagcaattccaacagcaatcttaagccggtcactccatataaag |
119 |
Q |
| |
|
||||||| |||||||||| ||| | ||||| ||||||||||| |||| ||||||||||||||| || || || ||| ||| || |||| | || |
|
|
| T |
37832248 |
gatgtctcggtgcactattcttggaacacaatcataatgcagatatgctagtccttgagcaattccgactgctattttacaccgaacattccacgttaat |
37832149 |
T |
|
| Q |
120 |
ggtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagtgtg |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||| || |
|
|
| T |
37832148 |
cgtggtgggggtttcttttcatgcaaaatatcatgaaggcttccattttccatgaattcatataagactaaaccatattcctctccaatccagtagtctg |
37832049 |
T |
|
| Q |
220 |
cgtatttcatcaaattttgatgcttaaacattgcaaggacttcaatttcattgaacatgacacttagttgcattttattgttccttccaaattcaaactt |
319 |
Q |
| |
|
||| ||| ||||||||| ||||||||||||| |||||||||||||||| ||| |||| |||||| || |||| ||||||| |||||||| | ||| |
|
|
| T |
37832048 |
cgtgtttgatcaaatttcgatgcttaaacatcccaaggacttcaatttcgttgcgtatgatacttagccgctttttcttgttccacccaaattcgacctt |
37831949 |
T |
|
| Q |
320 |
ctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatata |
391 |
Q |
| |
|
||||| ||||||| | || ||||||| ||| ||||||||||| ||| |||| ||||| ||||||| ||||| |
|
|
| T |
37831948 |
ctttacagcaaaaacatgctgaccaattatggctttgtacacagtaccatgtcctcccttgccaatgatata |
37831877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 20 - 411
Target Start/End: Complemental strand, 37837739 - 37837348
Alignment:
| Q |
20 |
gatgtctaggtgcactatgggtgggatacaataataatgcagatgcgctaatccttgagcaattccaacagcaatcttaagccggtcactccatataaag |
119 |
Q |
| |
|
||||||| |||||| ||| ||||| ||||| ||||||||||| |||| ||||||||||||||||||||| || |||| ||| ||||||| | ||| |
|
|
| T |
37837739 |
gatgtctcggtgcagtattggtggatcacaatcataatgcagataagctagtccttgagcaattccaacagctatattaaaccgaacactccaccttaag |
37837640 |
T |
|
| Q |
120 |
ggtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagtgtg |
219 |
Q |
| |
|
||||||||||||||| | ||||||||||| |||| ||||||||||||||| ||||||||||||| || ||||||||| || ||||||||||| | |
|
|
| T |
37837639 |
ggtggtgggggtttcatttcatgcaaaatttcataaaggcttccattttcaatgaatttatatatgattaaaccatagtcatttccaatccagtggctcc |
37837540 |
T |
|
| Q |
220 |
cgtatttcatcaaattttgatgcttaaacattgcaaggacttcaatttcattgaacatgacacttagttgcattttattgttccttccaaattcaaactt |
319 |
Q |
| |
|
|||| ||||||||||||||| ||| ||||||||||||||| ||| ||||| |||| | | ||| ||||| ||||||||||||||| |
|
|
| T |
37837539 |
aacatttgatcaaattttgatgcctaaggcccctaaggacttcaatttcgttgtccatgatacttcgccacttttgcctgttcaatccaaattcaaactt |
37837440 |
T |
|
| Q |
320 |
ctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttaggttctctg |
411 |
Q |
| |
|
||||| |||| |||| || | | || ||| ||||||||||| ||| ||||||||| || ||||||||||| ||||||||||||||||||| |
|
|
| T |
37837439 |
ctttacagcacaagcctgctcattaattatggctttgtacacaataccatgtgctcctcttccaataatatactgatcatttaggttctctg |
37837348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 20 - 409
Target Start/End: Complemental strand, 37851079 - 37850690
Alignment:
| Q |
20 |
gatgtctaggtgcactatgggtgggatacaataataatgcagatgcgctaatccttgagcaattccaacagcaatcttaagccggtcactccatataaag |
119 |
Q |
| |
|
||||||| |||||||||| ||||| | ||||| ||||||||||| | || ||||||||||||||| || || || ||| ||| || ||| | || |
|
|
| T |
37851079 |
gatgtctcggtgcactattggtggaacacaatcataatgcagatacaatagtccttgagcaattccgactgctattttacaccgcacatcccacgttaat |
37850980 |
T |
|
| Q |
120 |
ggtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagtgtg |
219 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| || |||||||||||||| |
|
|
| T |
37850979 |
ggtggtggaggtttcttttcatgcaagatatcatgaaggcttccattttccatgaattcatataagattaaaccatagtcatttccaatccagtagtcca |
37850880 |
T |
|
| Q |
220 |
cgtatttcatcaaattttgatgcttaaacattgcaaggacttcaatttcattgaacatgacacttagttgcattttattgttccttccaaattcaaactt |
319 |
Q |
| |
|
|||| || |||||| ||||||||||||| | |||||||||| ||| ||| | ||| |||||| || ||| ||||||| || ||||||| ||| |
|
|
| T |
37850879 |
aacatttgattaaatttcgatgcttaaacatccctaggacttcaacttcgttgcgcgtgatacttagccgcttttgcttgttccgtctgaattcaacctt |
37850780 |
T |
|
| Q |
320 |
ctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttaggttctc |
409 |
Q |
| |
|
||||| |||| || | || || || |||| ||||||||||| ||| ||||||||| | ||||||||||| |||||||||||||||| |
|
|
| T |
37850779 |
ctttacagcacaaacagtttcacaaattatagctttgtacacaataccatgtgctcctccaccaataatataccgatcatttaggttctc |
37850690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 305 - 411
Target Start/End: Complemental strand, 28089942 - 28089836
Alignment:
| Q |
305 |
tccaaattcaaacttctttaaagcaaaagcttgttgaccaagtataactttgtacacactacaatgtgctcccctgccaataatatagtgatcatttagg |
404 |
Q |
| |
|
||||||||||| ||||||| |||| || | |||||||||| || ||||||||||| ||| ||||||||| ||||||| |||||| |||||||||| |
|
|
| T |
28089942 |
tccaaattcaactttctttacagcacaaacctgttgaccaatcatggctttgtacacaataccatgtgctcctctgccaacaatataccaatcatttagg |
28089843 |
T |
|
| Q |
405 |
ttctctg |
411 |
Q |
| |
|
||||||| |
|
|
| T |
28089842 |
ttctctg |
28089836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 8680131 - 8680207
Alignment:
| Q |
120 |
ggtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccata |
196 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
8680131 |
ggtggcgggggtttcttttcatgcaaaatatcatgaaggcttccattttccatgaattcatataagagtaaaccata |
8680207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 198
Target Start/End: Complemental strand, 40542255 - 40542126
Alignment:
| Q |
69 |
aatccttgagcaattccaacagcaatcttaagccggtcactccatataaagggtggtgggggtttcttctcatgcaaaatatcatgaaggcttccatttt |
168 |
Q |
| |
|
||||||||||||||||||||||| |||||| || | || ||||| | |||| | | || || |||||||||||||||| |||| ||||||||||||| |
|
|
| T |
40542255 |
aatccttgagcaattccaacagctatcttattcctgacattccattttaaggattgcggcggattcttctcatgcaaaacttcataaaggcttccatttg |
40542156 |
T |
|
| Q |
169 |
ccatgaatttatataagactaaaccataat |
198 |
Q |
| |
|
||||||| | ||| ||| || |||||||| |
|
|
| T |
40542155 |
gcatgaatctgtatgagattagaccataat |
40542126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 36866420 - 36866265
Alignment:
| Q |
20 |
gatgtctaggtgcactatgggtgggatacaataataatgcagatgcgctaatccttgagcaattccaacagcaatcttaagccggtcactccatataaag |
119 |
Q |
| |
|
||||||| |||||||||| ||||| | ||||| ||||||||||| |||| ||||||||||||||||||||| | |||| ||| || |||| | ||| |
|
|
| T |
36866420 |
gatgtctcggtgcactattggtggaacacaatcataatgcagataagctagtccttgagcaattccaacagctaaattaaaccgaacattccacgttaag |
36866321 |
T |
|
| Q |
120 |
ggtggtgggggtttcttctcatgcaaaatatcatgaaggcttccattttccatgaa |
175 |
Q |
| |
|
||||||||||||||||| ||||||||||||| | |||||||||||| || ||||| |
|
|
| T |
36866320 |
ggtggtgggggtttcttttcatgcaaaatattgtaaaggcttccattgtcaatgaa |
36866265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 277
Target Start/End: Original strand, 29250525 - 29250658
Alignment:
| Q |
144 |
aaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagtgtgcgtatttcatcaaattttgatgct |
243 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| | | |||||||||||||| ||| ||||||||| |||| ||| ||||| |||| ||| |||| |
|
|
| T |
29250525 |
aaaatatcatgaaggcttccattttctatgaattcaaacaagactaaaccatattcctatccaatccattagtatgcttatttgatcatgtttaattgct |
29250624 |
T |
|
| Q |
244 |
taaacattgcaaggacttcaatttcattgaacat |
277 |
Q |
| |
|
|| ||||| |||| |||||||||| ||| |||| |
|
|
| T |
29250625 |
tacacattccaagtgcttcaatttctttgcacat |
29250658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 52264 - 52183
Alignment:
| Q |
132 |
ttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaatccagtagt |
216 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| |||||||||||| ||| |||||||||||| | | | ||||||||||||||| |
|
|
| T |
52264 |
ttcttttcatgtaaaatatcatgaaggcttc---tttccatgaattaataaaagactaaaccacagttctctccaatccagtagt |
52183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 31634106 - 31634179
Alignment:
| Q |
132 |
ttcttctcatgcaaaatatcatgaaggcttccattttccatgaatttatataagactaaaccataatcccctccaat |
208 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| |||||||||||| ||| |||||||||||| ||||| ||||||| |
|
|
| T |
31634106 |
ttcttttcatgtaaaatatcatgaaggcttc---tttccatgaattaatacaagactaaaccacaatcctctccaat |
31634179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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