View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11622_low_15 (Length: 438)
Name: NF11622_low_15
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 39567263 - 39567682
Alignment:
| Q |
1 |
tgcaagcattacagtgctcaagccagtaagaattggagagactgaaagctagaattagcagtgcatacctttctcttggggttggatctctatttagaca |
100 |
Q |
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| T |
39567263 |
tgcaagcattacagtgctcaagccagtaagaattggagagactgaaagctagaattagcagtgcatacctttctcttggggttggatctctatttagaca |
39567362 |
T |
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| Q |
101 |
attagacacgtacagtaattttgacagcaaccctttagcttagagtgaatccaaggaatgggtcttcatgaaggcgaagtctggattgatcattggtcta |
200 |
Q |
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| T |
39567363 |
attagacacgtacagtaattttgacagcaaccctttagcttagagtgaatccaaggaatgggtcttcatgaaggcgaagtctggattgatcattggtcta |
39567462 |
T |
|
| Q |
201 |
gtccaaaacagttgcccccaagtcggcaatgttgtttagacaagatgcctacatgataattgtgcaatttattgaaggtcattattatagaacaaagtgt |
300 |
Q |
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| T |
39567463 |
gtccaaaacagttgcccccaagtcggcaatgttgtttagacaagatgcctacatgataattgtgcaatttattgaaggtcattattatagaacgaagtgt |
39567562 |
T |
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| Q |
301 |
ctttcaactactgacgtacaagacatctttctacttctataaaagaatgacacagagtcaatttagtgaagcaacttcgtcgacgaaagctaaagatgtt |
400 |
Q |
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| T |
39567563 |
ctttcaactactgacgtacaagacatctttctacttctataaaagaatgacacagagtcaatttagtgaagcaacttcgtcgacgaaagctaaagatgtt |
39567662 |
T |
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| Q |
401 |
tgtctacttcgataaaagaa |
420 |
Q |
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| T |
39567663 |
tgtctacttcgataaaagaa |
39567682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 24 - 169
Target Start/End: Original strand, 39563364 - 39563503
Alignment:
| Q |
24 |
cagtaagaattggagagactgaaagctagaattagcagtgcatacctttctcttggggttggatctctatttagacaattagacacgtacagtaattttg |
123 |
Q |
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| T |
39563364 |
cagtaagaattcgagagagtgagagctagaagtagcagtgcatacctttctcttagagttggatctctattta------tagacatgtacaataattttg |
39563457 |
T |
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| Q |
124 |
acagcaaccctttagcttagagtgaatccaaggaatgggtcttcat |
169 |
Q |
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| T |
39563458 |
acagtagccttttagcttagagtgaatcgaaggaatgggtcttcat |
39563503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 427
Target Start/End: Original strand, 39572747 - 39573155
Alignment:
| Q |
17 |
ctcaagccagtaagaattggagagactgaaagctagaattagcagtgcatacctttctcttggggttggatctctatttagacaattagacacgtacagt |
116 |
Q |
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| T |
39572747 |
ctcaagtcagtaaaattttgagagagtgatagctagaattagctgtgcatacatttctcttagaggttgatctctatatatacatgttg-----tacaat |
39572841 |
T |
|
| Q |
117 |
aattttgacagcaaccctttagcttagagtgaatccaaggaatgggtcttcatgaaggcgaagtctggattgatcattggtctagtccaaaacagttgcc |
216 |
Q |
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| T |
39572842 |
atttttgaaggcaaccctttagcttagggtggaccgaaggaatagggattcatgaaggagaaatctgcattgttcattggccttgtccaaaacagatgcc |
39572941 |
T |
|
| Q |
217 |
cccaagtcggcaatgttgtttagacaagatgcctacatgataattgtgcaatttattgaaggtcattattatagaacaaagtgtctttcaactactgacg |
316 |
Q |
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| T |
39572942 |
cccaagtcggcaatgttatagagacaggtatcctacttgataattgtgctaagtgttgaagattatttttatagaaccacgtgtc-ttcaactattggcg |
39573040 |
T |
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| Q |
317 |
tacaagacatctttctacttctataaaagaa-tga---cacagagtcaatttagtgaagcaacttcgtcgacgaaagctaaagatgtttgtctacttcga |
412 |
Q |
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| T |
39573041 |
tagaagttgtcattctactttgataaaagaagtgacggcacaacatcaatttagtgaggcgacttcatcgatgaaaaccaaagatgtcattctacttcaa |
39573140 |
T |
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| Q |
413 |
taaaagaagtgatga |
427 |
Q |
| |
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| T |
39573141 |
taaaagaagtcatga |
39573155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 197 - 423
Target Start/End: Original strand, 39564641 - 39564858
Alignment:
| Q |
197 |
tctagtccaaaacagttgcccccaagtcggcaatgttgtttagacaagatgcctacatgataattgtgcaatttattgaaggtcattattatagaacaaa |
296 |
Q |
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| T |
39564641 |
tctagtccaaaacagttgcccc-aagtcggcagtgttg-----acaagatgcctgcttgataattgtgcaatgtattgaaggtcattattatccaacgaa |
39564734 |
T |
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| Q |
297 |
gtgtctttcaactactgacgtacaagacatctttctacttctataaaag--aatgacacagagtcaatttagtgaagcaacttcgtcgacgaaagctaaa |
394 |
Q |
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| T |
39564735 |
gtgtc-ttcaattattgacctacaagatgtcattcta----taaaaaaggtaatgacacaacgtcaatatagtgaagcgacttcgtcagcaaaggccaaa |
39564829 |
T |
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| Q |
395 |
gatgtttgtctacttcgataaaagaagtg |
423 |
Q |
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| T |
39564830 |
gatgtcattctacttcgataaaagaagtg |
39564858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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