View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11622_low_16 (Length: 433)
Name: NF11622_low_16
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_low_16 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0082 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 433
Target Start/End: Original strand, 38608130 - 38608544
Alignment:
| Q |
19 |
cacaccacattacttccaccgatcttgtctcatctcggatttcacgagcttgcaaccgccgctccgtcgctctccgatgccgcaaccaccgcttcctctg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608130 |
cacaccacattacttccaccgatcttgtctcatctcggatttcacgagcttgcaaccgccgctccgtcgctctccgatgccgcaaccaccgcttcctctg |
38608229 |
T |
|
| Q |
119 |
cttggaccggtccttctaccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608230 |
cttggaccggtccttctaccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttcc |
38608329 |
T |
|
| Q |
219 |
aggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgatt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608330 |
aggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgatt |
38608429 |
T |
|
| Q |
319 |
cattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgttcacg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608430 |
cattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgttcacg |
38608529 |
T |
|
| Q |
419 |
gccttcaaggtttcg |
433 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38608530 |
gccttcaaggtttcg |
38608544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 19 - 433
Target Start/End: Original strand, 38792913 - 38793327
Alignment:
| Q |
19 |
cacaccacattacttccaccgatcttgtctcatctcggatttcacgagcttgcaaccgccgctccgtcgctctccgatgccgcaaccaccgcttcctctg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38792913 |
cacaccacattacttccaccgatcttgtctcatctcggatttcacgagcttgcaaccgccgctccgtcgctctccgatgccgcaaccaccgcttcctctg |
38793012 |
T |
|
| Q |
119 |
cttggaccggtccttctaccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttcc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793013 |
cttggaccggtccttctaccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttcc |
38793112 |
T |
|
| Q |
219 |
aggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgatt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793113 |
aggtttattcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgatt |
38793212 |
T |
|
| Q |
319 |
cattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgttcacg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793213 |
cattcgaacattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgttcacg |
38793312 |
T |
|
| Q |
419 |
gccttcaaggtttcg |
433 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38793313 |
gccttcaaggtttcg |
38793327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 26 - 433
Target Start/End: Complemental strand, 38121986 - 38121579
Alignment:
| Q |
26 |
cattacttccaccgatcttgtctcatctcggatttcacgagcttgcaaccgccgctccgtcgctctccgatgccgcaaccaccgcttcctctgcttggac |
125 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| |||||||||| |
|
|
| T |
38121986 |
cattacttccaccgatcttgtctcatctcggttttcacgagcttgcaaccgccgctccgtcgctctccgacgctgcaaccaccacttcccctgcttggac |
38121887 |
T |
|
| Q |
126 |
cggtccttctaccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggttta |
225 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| || |
|
|
| T |
38121886 |
cggtcctttcaccattttcgctccctctgatgcatcgcttcgcacttgcttttcttgctctgttccgaatctccttcgtgaacacatagttccaggtata |
38121787 |
T |
|
| Q |
226 |
ttcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcga |
325 |
Q |
| |
|
||||| ||||| ||| | || ||| |||||||||||||||| ||||| |||||||| ||||||||| |||||||||||||||| ||||||||| || |
|
|
| T |
38121786 |
ttcaccatcgaatatcttcggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtcacttccgagtcgattcatcaga |
38121687 |
T |
|
| Q |
326 |
acattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgttcacggccttca |
425 |
Q |
| |
|
||| ||| ||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38121686 |
acaacacttccggcagtgctccaaaagtcttcatcggaggcgttgagattactcaaccggatctattcaacaacggaatggttgttgttcacggccttca |
38121587 |
T |
|
| Q |
426 |
aggtttcg |
433 |
Q |
| |
|
|||||||| |
|
|
| T |
38121586 |
aggtttcg |
38121579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 26 - 433
Target Start/End: Complemental strand, 28731560 - 28731153
Alignment:
| Q |
26 |
cattacttccaccgatcttgtctcatctcggatttcacgagcttgcaaccgccgctccgtcgctctccgatgccgcaaccaccgcttcctctgcttggac |
125 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||| || || ||||||||| ||||| ||||||||| |
|
|
| T |
28731560 |
cattacttccacctatcttgtctcatctcggttttcacgagcttgcaaccgccgctcctacgctctctgacgctgcaaccaccacttcccttgcttggac |
28731461 |
T |
|
| Q |
126 |
cggtccttctaccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggttta |
225 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||| ||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28731460 |
cggtcctttcaccattttcgctccctctgatgcatcgatccgcacttgtttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggtata |
28731361 |
T |
|
| Q |
226 |
ttcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcga |
325 |
Q |
| |
|
||||| ||||| ||| | || ||| |||||||||||||||||||||| |||||||| ||||||||| |||| ||||||||||| ||||||||| ||| |
|
|
| T |
28731360 |
ttcaccatcgaatatctccggcgtcttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaactgtcacttccgagtcgattcatccga |
28731261 |
T |
|
| Q |
326 |
acattactaccggcggtgctccaaaagttttcatcggaggcgttgagattgctcaaccggatctattcaacaacggaatggttgttgttcacggccttca |
425 |
Q |
| |
|
||| ||| ||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28731260 |
acagcacttccggcggtgctccaaaagtattcatcggaggcgttgagattactcaaccagatctattcaacaacggaatggttgttgttcacggccttca |
28731161 |
T |
|
| Q |
426 |
aggtttcg |
433 |
Q |
| |
|
|||||||| |
|
|
| T |
28731160 |
aggtttcg |
28731153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 26 - 328
Target Start/End: Complemental strand, 31529514 - 31529212
Alignment:
| Q |
26 |
cattacttccaccgatcttgtctcatctcggatttcacgagcttgcaaccgccgctccgtcgctctccgatgccgcaaccaccgcttcctctgcttggac |
125 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||| ||||| |||||||||| |
|
|
| T |
31529514 |
cattacttccaccgattttgtctcatctcggttttcacgagcttgcaaccgccgctccatcgctctccgacgctgcaaccaccacttcccctgcttggac |
31529415 |
T |
|
| Q |
126 |
cggtccttctaccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggttta |
225 |
Q |
| |
|
|||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
31529414 |
cggtcctttcactattttcgctccctctgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggtata |
31529315 |
T |
|
| Q |
226 |
ttcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcga |
325 |
Q |
| |
|
||||| ||||| ||| | || ||| |||||||||||||||| ||||| |||||||| ||||||||| |||||||||||||||| ||||||||| ||| |
|
|
| T |
31529314 |
ttcaccatcgaatatctccggcgacttgcttttggcaccaagattgagactctcagtcccggccgttgcgtaaccgtcacttccgagtcgattcatccga |
31529215 |
T |
|
| Q |
326 |
aca |
328 |
Q |
| |
|
||| |
|
|
| T |
31529214 |
aca |
31529212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 26 - 328
Target Start/End: Complemental strand, 51801582 - 51801280
Alignment:
| Q |
26 |
cattacttccaccgatcttgtctcatctcggatttcacgagcttgcaaccgccgctccgtcgctctccgatgccgcaaccaccgcttcctctgcttggac |
125 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||| ||||| |||||||||| |
|
|
| T |
51801582 |
cattacttccaccgattttgtctcatctcggttttcacgagcttgcaaccgccgctccgtcgctctccgacgctgcaaccaccacttcccctgcttggac |
51801483 |
T |
|
| Q |
126 |
cggtccttctaccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggttta |
225 |
Q |
| |
|
|||||||| || |||||||||||||| ||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
51801482 |
cggtcctttcactattttcgctccctctgatacttcgcttcacacttgcttttcttgctgtgttccgaatctcctccgtgaacacatcgttccagatata |
51801383 |
T |
|
| Q |
226 |
ttcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcga |
325 |
Q |
| |
|
||||| ||| | || | || ||| |||||||||||||||||||||| |||||||| ||||||||| ||| |||||||||||||||||||||| ||| |
|
|
| T |
51801382 |
ttcaccatcaaatacctccggcgacttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaatcgtcacttccgattcgattcatccga |
51801283 |
T |
|
| Q |
326 |
aca |
328 |
Q |
| |
|
||| |
|
|
| T |
51801282 |
aca |
51801280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 26 - 328
Target Start/End: Original strand, 34875706 - 34876008
Alignment:
| Q |
26 |
cattacttccaccgatcttgtctcatctcggatttcacgagcttgcaaccgccgctccgtcgctctccgatgccgcaaccaccgcttcctctgcttggac |
125 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||| ||||| |||||||||| |
|
|
| T |
34875706 |
cattacatccaccgattttgtctcatctcggttttcacgagcttgcaaccgccgctccgtcactctccgacgctgcaaccaccacttcccctgcttggac |
34875805 |
T |
|
| Q |
126 |
cggtccttctaccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggttta |
225 |
Q |
| |
|
|||||||| || ||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34875806 |
cggtcctttcactatttttgctccctttgatgcttcgcttcacacttgcttttcttgctctgttccgaatctcctccgtgaacacatcgttccaggtata |
34875905 |
T |
|
| Q |
226 |
ttcactatcgagtatttgcgtacgcttccttttggcaccaagatcgagacgctcagtccaggccgttgcataaccgtcacttccgattcgattcattcga |
325 |
Q |
| |
|
||||| ||||| ||| | || ||| |||||||||||||||||||||| |||||||| ||||||||| ||||| |||||||||| ||||||||| ||| |
|
|
| T |
34875906 |
ttcaccatcgaatatctccggcgacttgcttttggcaccaagatcgagactctcagtcccggccgttgcgtaaccatcacttccgagtcgattcatccga |
34876005 |
T |
|
| Q |
326 |
aca |
328 |
Q |
| |
|
||| |
|
|
| T |
34876006 |
aca |
34876008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 37 - 186
Target Start/End: Complemental strand, 34495 - 34346
Alignment:
| Q |
37 |
ccgatcttgtctcatctcggatttcacgagcttgcaaccgccgctccgtcgctctccgatgccgcaaccaccgcttcctctgcttggaccggtccttcta |
136 |
Q |
| |
|
||||||||||| |||||||| || |||||||| || || || ||||| || ||||| || |||| |||||||| ||||||| |||||||||||||||| |
|
|
| T |
34495 |
ccgatcttgtcccatctcggcttccacgagctagccacggcggctccttcactctctgactccgcggccaccgctgcctctgcctggaccggtccttcta |
34396 |
T |
|
| Q |
137 |
ccattttcgctccctccgatgcttcgcttcgcacttgcttttcttgctct |
186 |
Q |
| |
|
| || |||||||| || ||||| || || |||| ||||| ||||||||| |
|
|
| T |
34395 |
cgatcttcgctccatcagatgcctccctctgcacctgcttctcttgctct |
34346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 432
Target Start/End: Complemental strand, 34165 - 34112
Alignment:
| Q |
379 |
caaccggatctattcaacaacggaatggttgttgttcacggccttcaaggtttc |
432 |
Q |
| |
|
||||| ||||| ||||||||||| ||||| ||| |||| ||||||||||||||| |
|
|
| T |
34165 |
caacctgatctcttcaacaacggcatggtggttattcatggccttcaaggtttc |
34112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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