View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11622_low_17 (Length: 423)
Name: NF11622_low_17
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 34012058 - 34011897
Alignment:
| Q |
18 |
atattaagggaaatgagatgcatgcaaagggtaagagtgaggtgggaagagagaacatgaaaggaaactgatggatggtagctagcttttggagtataat |
117 |
Q |
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| T |
34012058 |
atattaagggaaatgagatgcatgcaaagggtaagagtgaggtgggaagagagaacatgaaaggaaactgatggatggtagctagcttttggagtataat |
34011959 |
T |
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| Q |
118 |
gacgttgccatgcctctactctcactccacttacgtacattaatttggaactaagttatggg |
179 |
Q |
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| T |
34011958 |
gacgttgccatgcctctactctcactccacttacgtacattaatttggaactaagttatggg |
34011897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 280 - 411
Target Start/End: Complemental strand, 34011796 - 34011664
Alignment:
| Q |
280 |
aatgagttttagatcaaagaagaagtcgtcggagctcaaactcacactatttgttggttcaatttcatctgtttgtattttggttgatagctgctgtgca |
379 |
Q |
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| T |
34011796 |
aatgagttttagatcaaagaagaagtcgtcggagctcaaactcacactatttgttggttcaatttcatctgtttgtattttggttgatagctgctgtgca |
34011697 |
T |
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| Q |
380 |
ggtgcctttactatg-aattaccacgttttcat |
411 |
Q |
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| T |
34011696 |
ggtgcctttactatgaaattaccacgatttcat |
34011664 |
T |
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