View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11622_low_18 (Length: 412)
Name: NF11622_low_18
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 15 - 395
Target Start/End: Original strand, 38581878 - 38582258
Alignment:
| Q |
15 |
aaagggtgcaaaggagaagaaagaaagtttaatgggaaacaagaagagaccacgtggtgattatggagcaaaaggaagcataataaagtttccgaaaata |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
38581878 |
aaagggtgcaaaggagaagaaagaaagtttaatgggaaacaagaagagatcacgtggtggttatggagcaaaaggaagcataataaagttgccaaaaata |
38581977 |
T |
|
| Q |
115 |
gaaattcatgaaatgggacccactctacaagtgattgtaacatgtggggttgatgaacattttattttctgtgaaattatgagaatactgcatgaagaga |
214 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38581978 |
gaaattcatgaaatgggatccactctacaagtgattgtaacatgtggggttgatgaacattttattttctgtgaaattatgagaatactgcatgaagaga |
38582077 |
T |
|
| Q |
215 |
acgttgaggttatttcttcaaattcttctttgactggtgattcacttcttcataccgtgcatgcccaggtatatatacacatacacacatgcaaaccttt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38582078 |
acgttgaggttatttcttcaaattcttctttaactggtgattcacttcttcataccgtgcatgcccaggtatatatacacatacacacatgcaaaccttt |
38582177 |
T |
|
| Q |
315 |
acacatgcaaatgtgaccgcaattttggtttaattgcattatgatgttgctgcaacttgcaaagaccctatatattatatt |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38582178 |
acacatgcaaatgtgaccgcaattttggtttaattgcattatgatgttgctgcaacttgcaaagaccctatatattatatt |
38582258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 22 - 389
Target Start/End: Complemental strand, 38617613 - 38617238
Alignment:
| Q |
22 |
gcaaaggagaagaaagaaagtttaatgggaaacaagaagagaccacgtggtgattatggagcaaaaggaagcataataaagtttccgaaaatagaaattc |
121 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
38617613 |
gcaaaggagaaaaaagaaagtttaatgggaaacaagaagagatcacgtggtggttatggagcaaaaggaagcataataaagttgccaaaaatagaaattc |
38617514 |
T |
|
| Q |
122 |
atgaaatgggacccactctacaagtgattgtaacatgtggggttgatgaacattttattttctgtgaaattatgagaatactgcatgaagagaacgttga |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38617513 |
atgaaatgggacccactctacaagtgattgtaacatgtggggttgataaacattttattttctgtgaaattatgagaatactgcatgaagagaacgttga |
38617414 |
T |
|
| Q |
222 |
ggttatttcttcaaattcttctttgactggtgattcacttcttcataccgtgcatgcccaggtatatatacacat--------acacacatgcaaacctt |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38617413 |
ggttatttcttcaaattcttctttgactggtgattcacttcttcataccgtgcatgcccaggtatatatacacatacactgatacacacatgcaaacctt |
38617314 |
T |
|
| Q |
314 |
tacacatgcaaatgtgaccgcaattttggtttaattgcattatgatgttgctgcaacttgcaaagaccctatatat |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38617313 |
tacacatgcaaatgtgaccgcaattttggtttaattgcattatgatgttgctgcaacttgcaaagaccctatatat |
38617238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 22 - 291
Target Start/End: Original strand, 38563677 - 38563955
Alignment:
| Q |
22 |
gcaaaggagaagaaagaaagtttaatgggaaacaagaagagaccacgtggtga------------ttatggagcaaaaggaagcataataaagtttccga |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||| |||| || | |
|
|
| T |
38563677 |
gcaaaggagaagaaagaaagtttaatgggaaacaagaagagatcacgtggtggctggtcgagttcttatggagcgaaaggaagcatag---agttgccaa |
38563773 |
T |
|
| Q |
110 |
aaatagaaattcatgaaatgggacccactctacaagtgattgtaacatgtggggttgatgaacattttattttctgtgaaattatgagaatactgcatga |
209 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38563774 |
aaatagagattcatgaaataggacccactctacaagtgattgtaacatgtggggttgatgaacattttattttctgtgaaattatgagaatactgcatga |
38563873 |
T |
|
| Q |
210 |
agagaacgttgaggttatttcttcaaattcttctttgactggtgattcacttcttcataccgtgcatgcccaggtatatata |
291 |
Q |
| |
|
||||||||| || ||||| |||||||||||||||||| | |||||||||||||||||||| |||| ||| |||||||||||| |
|
|
| T |
38563874 |
agagaacgtcgatgttatctcttcaaattcttctttggccggtgattcacttcttcatactgtgcttgctcaggtatatata |
38563955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 97 - 305
Target Start/End: Original strand, 38606566 - 38606774
Alignment:
| Q |
97 |
ataaagtttccgaaaatagaaattcatgaaatgggacccactctacaagtgattgtaacatgtggggttgatgaacattttattttctgtgaaattatga |
196 |
Q |
| |
|
|||||||| || |||||||| || |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38606566 |
ataaagttgccaaaaatagagatccatgaaatgggacccactctacaaataattgtaacatgtggggttgatgaacattttattttctgtgaaattatga |
38606665 |
T |
|
| Q |
197 |
gaatactgcatgaagagaacgttgaggttatttcttcaaattcttctttgactggtgattcacttcttcataccgtgcatgcccaggtatatatacacat |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||| |||||||||||| |||| |
|
|
| T |
38606666 |
gaatactgcatgaagagaacgttgaggttatttcttcaaatacttctttgactggccattcacttcttcataccgtacatgctcaggtatatatatacat |
38606765 |
T |
|
| Q |
297 |
acacacatg |
305 |
Q |
| |
|
||||||||| |
|
|
| T |
38606766 |
acacacatg |
38606774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 38606485 - 38606534
Alignment:
| Q |
22 |
gcaaaggagaagaaagaaagtttaatgggaaacaagaagagaccacgtggtga |
74 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
38606485 |
gcaaaggagaaaaaagaaagtttaatgggaaac---aagagatcacgtggtga |
38606534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University