View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11622_low_19 (Length: 410)
Name: NF11622_low_19
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 15 - 391
Target Start/End: Complemental strand, 35681926 - 35681550
Alignment:
| Q |
15 |
atgaacaagagaccacctggatcccattggttgaatcgtgagcgtccctttttatggacaaagcagccactgagcatggtaccaacaatagcagactcac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35681926 |
atgaacaagagaccacctggatcccattggttgaatcgtgagcgtccctttttatggacaaagcagccactgagcaaggtaccaacaatagcagactcac |
35681827 |
T |
|
| Q |
115 |
ttgataattctgtataagttagagtactattaagtgatgcctgatcattttgtacttgaagtgtaagaatgaatgaaaccaacacagtaaacgaatccct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35681826 |
ttgataattctgtataagttagagtactgttaagtgatgcctgatcattttgtacttgaagtgtaagaatgaatgaaaccaacacagtaaacgaatccct |
35681727 |
T |
|
| Q |
215 |
ttttatttaagagaataaccaatatcccttttcatgaaatccaagtaaaggtttaataacatgcagcagaacaccaaatggtgagagtacccttagtcta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35681726 |
ttttatttaagagaataaccaatatcccttttcatgaaatccaagtaaaggtttaataacatgcagcagaacaccaaatggtgagagtacccttagtcta |
35681627 |
T |
|
| Q |
315 |
acgtttcttggtcccactttatataagcctttagtaaagcttaaaaatgcattcataagatatgcataatattgatc |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35681626 |
acgtttcttggtcccactttatataagcctttagtaaagcttaaaaatgcattcataaaatatgcataatattgatc |
35681550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 128 - 391
Target Start/End: Complemental strand, 31635698 - 31635439
Alignment:
| Q |
128 |
ataagttagagtactattaagtgatgcctgatcattttgtacttgaagtgtaagaatgaatgaaaccaacacagtaaacgaatccctttttatttaagag |
227 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| || ||||||||| |||||||| |||| |
|
|
| T |
31635698 |
ataagttagagcaccgttaagtgatgcctgatcattttgtacttgaagtataagaataaatgaaaccaacaca-tagacgaatccccttttatttgagag |
31635600 |
T |
|
| Q |
228 |
aataaccaatatcccttttcatgaaatccaagtaaaggtttaataacatgcagcagaacaccaaatggtgagagtacccttagtctaacgtttcttggtc |
327 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||| |||||||||| |
|
|
| T |
31635599 |
aataaccaatatcctttttcatgaaatccaagtaaaggtttaataacatgcag---aacaccaaatggtgagagtacccttggtataatgtttcttggtt |
31635503 |
T |
|
| Q |
328 |
ccactttatataagcctttagtaaagcttaaaaatgcattcataagatatgcataatattgatc |
391 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
31635502 |
ccactttatataagcctttaataaagcttaaaaatacattcacaagatatgcataatattgatc |
31635439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 31635991 - 31635882
Alignment:
| Q |
27 |
ccacctggatcccattggttgaatcgtgagcgtccctttttatggacaaagcagccactgagcatggtaccaacaatagcagactcacttgataattctg |
126 |
Q |
| |
|
||||| ||||||||||||||||| ||| |||| |||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31635991 |
ccacccggatcccattggttgaactctgaaggtccgtttttatggacagagcagccactgtgcaatgtaccaacaatagcagactcacttgataattcta |
31635892 |
T |
|
| Q |
127 |
tataagttag |
136 |
Q |
| |
|
|||||||||| |
|
|
| T |
31635891 |
tataagttag |
31635882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 27 - 391
Target Start/End: Complemental strand, 4303113 - 4302752
Alignment:
| Q |
27 |
ccacctggatcccattggttgaatcgtgagcgtccctttttatggacaaagcagccactgagcatggtaccaacaatagcagactcacttgataattctg |
126 |
Q |
| |
|
||||| ||||||||||||||||| |||| |||| |||||||||||| ||| | ||||| ||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
4303113 |
ccacccggatcccattggttgaactgtgaaggtccgtttttatggacagagctgtcactgtgcaatgtaccaacaatagcagaatcacttgataattcta |
4303014 |
T |
|
| Q |
127 |
tataagttagagtactattaagtgatgcctgatcattttgtacttgaagtgtaagaatgaatgaaaccaacacagtaaacgaatccctttttatttaaga |
226 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||| ||| |
|
|
| T |
4303013 |
tataagttagagcactgttaagtgatgcctaatcattttgtacttgaagtataagaatgaatgaaaccaacacagttgacgaatccccttttatttgaga |
4302914 |
T |
|
| Q |
227 |
gaataaccaatatcccttttcatgaaatccaagtaaaggtttaataacatgcagcagaacaccaaatggtgagagtacccttagtctaacgtttcttggt |
326 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
4302913 |
gaataaccaatatcctttttcatgaaatccaagtaaaggtttaataacat---gcagaacaccaaatggtgagagtacccttagtataatgtttcttggt |
4302817 |
T |
|
| Q |
327 |
cccactttatataagcctttagtaaagcttaaaaatgcattcataagatatgcataatattgatc |
391 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
4302816 |
tccactttatataagcctttaataaagcttaaaaatacattcacaagatatgcataatattgatc |
4302752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 223; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 30 - 391
Target Start/End: Complemental strand, 37193008 - 37192646
Alignment:
| Q |
30 |
cctggatcccattggttgaatcgtgagcgtccctttttatggacaaagcagccactgagcatggtaccaacaatagcagactcacttgataattctgtat |
129 |
Q |
| |
|
|||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||| || |
|
|
| T |
37193008 |
cctggatcccattgagtgaactgtgagggtccctttttatggacaaagcagccactgagcaatgtaccaacaattgcagacgcacttgataattctatac |
37192909 |
T |
|
| Q |
130 |
aagttagagtactattaagtgatgcctgatcattttgtacttgaagtgtaagaatgaatgaaaccaacacagtaaacgaatccctttttatttaagagaa |
229 |
Q |
| |
|
||| ||||| | | ||||||||||||||| ||| ||||||||||||| || |||||||||||||||||||||||| | |||||||||||||| |||||| |
|
|
| T |
37192908 |
aagctagagcattgttaagtgatgcctgaccatgttgtacttgaagtataggaatgaatgaaaccaacacagtaagtggatccctttttatttgagagaa |
37192809 |
T |
|
| Q |
230 |
taaccaatatcccttttcatgaaatccaagtaaaggtttaataacatgcagcagaacaccaaatggtgagagtaccc----ttagtctaacgtttcttgg |
325 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37192808 |
taaccaatatcctttttcatgaagtccaagtaaaggtttaataacat---gcagaacatcaaatggtgagagtacccttagttagtctaacgtttcttgg |
37192712 |
T |
|
| Q |
326 |
tcccactttatataagcctttagtaaagcttaaaaatgcattcataagatatgcataatattgatc |
391 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37192711 |
tcccacttcatataagcctttaataaagcttaaaaatgcattcataagatatgcataatattgatc |
37192646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University