View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11622_low_21 (Length: 390)
Name: NF11622_low_21
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 40960751 - 40961125
Alignment:
| Q |
1 |
acccaagaatgagcccgatgaacaacaacacatgcaggtcactttttgctccactccaataatcttatgttacctattaaattgtgtgaatattatcgac |
100 |
Q |
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| T |
40960751 |
acccaagaatgagcccgatgaacaacaacacatgcaggtcactttttgctccactccaataatcttatgttacctattaaattgtgtgaatattatcgac |
40960850 |
T |
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| Q |
101 |
taactgttagcttttcttctgtgaaacagatgacagatgctagttgcaaactttgcacagagcgtaaagtgggtgtaagggatattattcgcgcaggact |
200 |
Q |
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| T |
40960851 |
taactgttagcttttcttctgtgaaacagatgacagatgctagttgcaaactttgcacagagcgtaaagtgggtgtaagggatattattcgtgcaggact |
40960950 |
T |
|
| Q |
201 |
tgctgaccgatatatggtttgcaccttaatgctttactgatatttaattaaaatttaaaaactcatctaatgcacttttaatgacccgggttttgattgt |
300 |
Q |
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| T |
40960951 |
tgctgaccgatatatggtttgcaccttaatgctttactgatatttaattaaaatttaaaaactcatctaatgcacttttaatgacccgggttttgattgt |
40961050 |
T |
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| Q |
301 |
tgctctgcttgttcagctggaatgtatcgcctgtggtcattcttggtctgcttcttgtgatgcggtgtctgtgct |
375 |
Q |
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| T |
40961051 |
tgctctgcttgttcagctggaatgtatcgcctgtggtcattcttggtctgcctcttgtgatgcggtgtctgtgct |
40961125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 3 - 375
Target Start/End: Original strand, 40947564 - 40947931
Alignment:
| Q |
3 |
ccaagaatgagcccgatgaacaacaacacatgcaggtcactttttgctccactccaataatcttatgttacctattaaattgtgtgaatattatcgacta |
102 |
Q |
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| T |
40947564 |
ccaaggatgagcccgatgagccacaacacatgcaggtcactttttgctccatcccaacaattttatgttatctgttaaattgtgtgaatattatttactg |
40947663 |
T |
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| Q |
103 |
actgttagcttttcttct-gtgaaacagatgacagatgctagttgcaaactttgcacagagcgtaaagtgggtgtaagggatattattcgcgcaggactt |
201 |
Q |
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| T |
40947664 |
aatgttggcttttctactggtgaaacagatgacagatgctcgctgcaaaatttgcgatgagcaaaaagttggcgtgagggatattatccgtgcaggatat |
40947763 |
T |
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| Q |
202 |
gctgaccgatatatggtttgcaccttaatgctttactgatatttaattaaaatttaaaaactcatctaatgcacttttaatgacccgggttttgattgtt |
301 |
Q |
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| T |
40947764 |
gctgaccgatatatggtcagcgccttaatgctttactgatatttca--aatat---caaattcatctcctgtagtttttgtgacttcgg-tttaattttt |
40947857 |
T |
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| Q |
302 |
gctctgcttgttcagctggaatgtatcgcctgtggtcattcttggtctgcttcttgtgatgcggtgtctgtgct |
375 |
Q |
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| T |
40947858 |
gctctgcttgttcagctggaatgcatagcttgtggtcattcctggtctgcctctcgtgatgcggtgtctgtgct |
40947931 |
T |
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