View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11622_low_22 (Length: 376)
Name: NF11622_low_22
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 29733529 - 29733227
Alignment:
| Q |
16 |
atcatcacattaagttaagagcaagatccagagagaatttaatatcacttcttttttccaaaatattaaggtattaacctaaaaggtatattggtgttgc |
115 |
Q |
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| T |
29733529 |
atcatcacattaagttaagagcaagatacagagagaatttaatatcacttcttttt-ccaaaatattaaggtattaacctaaaaggtatattggtgttgc |
29733431 |
T |
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| Q |
116 |
tgcaaaaaa-tttaaagcagcaataaataaagacaaagcttgtgtacttcacacataaataaaaagtagccttacacaccaaacgaaattgtcgacaata |
214 |
Q |
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| T |
29733430 |
tgcaaaaaaatttaaaggggcaataaataaagacaaagattgtgtacttcacacataaataaaaagtagccttacacaccaaacgaaattatcgacaaca |
29733331 |
T |
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| Q |
215 |
gttataatttagagtcacactcgtcgaaacaaagacagtcatacataactatgcagtgtcgaagatggttattagcctatgaccaagcccgttcacgagt |
314 |
Q |
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| T |
29733330 |
gttataattcagagtcacacacgtcgaaacaaaaacagtcatacataattatacagtgtcgaagatggttattagcctatgaccaagctcggtcatgagt |
29733231 |
T |
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| Q |
315 |
gggt |
318 |
Q |
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|||| |
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| T |
29733230 |
gggt |
29733227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 322 - 364
Target Start/End: Complemental strand, 29733159 - 29733117
Alignment:
| Q |
322 |
tggcgcattggtttaagttcgctttggcatgccttgggtcctt |
364 |
Q |
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| T |
29733159 |
tggcgcattggtttaagttcgctttggcatgccttgggtcctt |
29733117 |
T |
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