View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11622_low_25 (Length: 354)
Name: NF11622_low_25
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_low_25 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 334
Target Start/End: Complemental strand, 29820276 - 29819956
Alignment:
| Q |
14 |
gcataggcaagtcaactattgctagagcggtctatgaagcaatccgatgtgaatttcaacttacttgctttctagaaaatgttagagagatatctgagac |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29820276 |
gcataggcaagtcaactattgctagagcggtctatgaagcaatccgatgtgaatttcaacttacttgctttctagaaaatgttagagagatatctgagac |
29820177 |
T |
|
| Q |
114 |
aaatggtttagttcacttacaaagacaacttctttctcatatgagtataagtaggaatgattttcataatttgtatgatggcnnnnnnncaatacaaaac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29820176 |
aaatggtttagttcacttacaaagacaacttctttctcatatgagtataagtaggaatgattttcataatttgtatgatggcaaaaaaacaatacaaaac |
29820077 |
T |
|
| Q |
214 |
tctttccgtagaaaaaaggttctacttgttcttgatgatgtgaatgaattaaaccagttggagaatatggctgggaagcaagactggtttggtccgggaa |
313 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29820076 |
tctttccgtaggaaaaaggttctacttgttcttgatgatgtgaatgaattaaaccagttggagaatatggctgggaagcaagactggtttggtccgggaa |
29819977 |
T |
|
| Q |
314 |
gtagagtaataatcacaacga |
334 |
Q |
| |
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||||||||||||||||||||| |
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| T |
29819976 |
gtagagtaataatcacaacga |
29819956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 332
Target Start/End: Original strand, 29571756 - 29572074
Alignment:
| Q |
14 |
gcataggcaagtcaactattgctagagcggtctatgaagcaatccgatgtgaatttcaacttacttgctttctagaaaatgttagagagatatctgagac |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29571756 |
gcataggcaagtcaactattgctagagcggtctatgaaacaatccgatgtgaatttgaacttacttgctttctagaaaatgttagagagatatctgagac |
29571855 |
T |
|
| Q |
114 |
aaatggtttagttcacttacaaagacaacttctttctcatatgagtataagtaggaatgattttcataatttgtatgatggcnnnnnnncaatacaaaac |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
29571856 |
aaatggtttagttcacttacaaagacaacttctttctcatctgagtataagtaggaatgattttcatgatttgtatgatgggaaaaaaacaatacaaaac |
29571955 |
T |
|
| Q |
214 |
tctttccgtagaaaaaaggttctacttgttcttgatgatgtgaatgaattaaaccagttggagaatatggctgggaagcaagactggtttggtccgggaa |
313 |
Q |
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||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| ||||| |||||||||||||||| |
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| T |
29571956 |
tctttatgcagaaaaaaggttctacttgttcttgatgatgtgaatgaactaaaccagttggagaatttggttgggaaacaagattggtttggtccgggaa |
29572055 |
T |
|
| Q |
314 |
gtagagtaataatcacaac |
332 |
Q |
| |
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||||||||||||||||||| |
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| T |
29572056 |
gtagagtaataatcacaac |
29572074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 14 - 332
Target Start/End: Complemental strand, 29828519 - 29828201
Alignment:
| Q |
14 |
gcataggcaagtcaactattgctagagcggtctatgaagcaatccgatgtgaatttcaacttacttgctttctagaaaatgttagagagatatctgagac |
113 |
Q |
| |
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||||||| ||| |||||||||||||||| || || |||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||| | |
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| T |
29828519 |
gcataggtaagacaactattgctagagctgtttacgaagcaatccaatgtgaatttcaaactacttgctttcttgaaaatgttagagagatatctgaggc |
29828420 |
T |
|
| Q |
114 |
aaatggtttagttcacttacaaagacaacttctttctcatatgagtataagtaggaatgattttcataatttgtatgatggcnnnnnnncaatacaaaac |
213 |
Q |
| |
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|||||||||||||||| ||||||| ||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
29828419 |
aaatggtttagttcacatacaaaggcaacttctttctcatctaagtataagtagaaatgattttcataatttgtatgatggcaaaaaaacaatacaaaat |
29828320 |
T |
|
| Q |
214 |
tctttccgtagaaaaaaggttctacttgttcttgatgatgtgaatgaattaaaccagttggagaatatggctgggaagcaagactggtttggtccgggaa |
313 |
Q |
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||||| | ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||| ||||||||||| |||| |
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| T |
29828319 |
tctttatgcagaaaaaaggttctacttgttcttgatgatgtgaatgaaataaatcagttggagaatttggctgggaagcaagattggtttggtccaggaa |
29828220 |
T |
|
| Q |
314 |
gtagagtaataatcacaac |
332 |
Q |
| |
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||||||||||||||||||| |
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| T |
29828219 |
gtagagtaataatcacaac |
29828201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 20885 - 20990
Alignment:
| Q |
139 |
caacttctttctcatatgagtataagtaggaatgattttcataatttgtatgatggc-nnnnnnncaatacaaaactctttccgtagaaaaaaggttcta |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20885 |
caacttctttctcatatgagtataagtaggaatgattttcataatttgtatgatggcaaaaaaaacaatacaaaactctttccgtagaaaaaaggttcta |
20984 |
T |
|
| Q |
238 |
cttgtt |
243 |
Q |
| |
|
|||||| |
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| T |
20985 |
cttgtt |
20990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 226 - 331
Target Start/End: Complemental strand, 11124282 - 11124177
Alignment:
| Q |
226 |
aaaaaggttctacttgttcttgatgatgtgaatgaattaaaccagttggagaatatggctgggaagcaagactggtttggtccgggaagtagagtaataa |
325 |
Q |
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||||||||||| ||||||||||||||||||| ||||||| ||| ||||||||| | |||||||||||||| ||||||||||| ||||||||||| |||| |
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| T |
11124282 |
aaaaaggttcttcttgttcttgatgatgtgagcgaattaagccaattggagaatttagctgggaagcaagaatggtttggtccaggaagtagagttataa |
11124183 |
T |
|
| Q |
326 |
tcacaa |
331 |
Q |
| |
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|||||| |
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|
| T |
11124182 |
tcacaa |
11124177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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