View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11622_low_26 (Length: 329)

Name: NF11622_low_26
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11622_low_26
NF11622_low_26
[»] chr5 (8 HSPs)
chr5 (18-317)||(39737914-39738214)
chr5 (23-316)||(39863066-39863380)
chr5 (35-203)||(39855879-39856047)
chr5 (53-203)||(38980898-38981048)
chr5 (58-171)||(39909922-39910035)
chr5 (204-307)||(38980770-38980873)
chr5 (23-203)||(39846152-39846329)
chr5 (204-317)||(39846351-39846464)
[»] chr3 (1 HSPs)
chr3 (126-226)||(53495617-53495717)
[»] chr6 (2 HSPs)
chr6 (71-167)||(14329318-14329415)
chr6 (71-167)||(14422328-14422425)


Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 39738214 - 39737914
Alignment:
Q  18 aagagcttctcataaccttccaattcagattgagtttccggaatttgatcttc-aacacttctcaacttgatttgatcatcaacgaggtgctggaaaatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  39738214 aagagcttctcataaccttccaattcagattgagtttccggaatttgatcttccaacacttttcaacttgatttgatcatcaacgaggtgctggaaaatt 39738115  T
Q  117 gacttaacatctttattcaaagatgtaatcttatctttctcttgatcttgaatctcagcaattttggccctgtcttcttgtagttttgcaatctgagcat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39738114 gacttaacatctttattcaaagatgtaatcttatctttctcttgatcttgaatctcagcaattttggccctgtcttcttgtagttttgcaatctgagcat 39738015  T
Q  217 caagagagttgagttctgtttggtggtttgtgaaggaagtcattgagttcaatattttctgtctggtttccttcaatgcttcactatcttggtctgtgct 316  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39738014 caagagagttgagttctgtttggtcgtttgtaaaggaagtcattgagttcaatattttctgtctggtttccttcaatgcttcactatcttggtcagtgct 39737915  T
Q  317 c 317  Q
    |    
T  39737914 c 39737914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 316
Target Start/End: Original strand, 39863066 - 39863380
Alignment:
Q  23 cttctcataaccttccaattcagattgagtttccggaatttgatcttcaacacttctcaacttgatttgatcatcaacgaggtgctggaaaattgactta 122  Q
    |||||||| || ||||||||||| ||| |  ||||| |||| ||||||||||||| |||| ||||||||||||| | | ||| | ||||||||||| |||    
T  39863066 cttctcatgactttccaattcagtttgcgcctccgggattttatcttcaacacttttcaatttgatttgatcattagcaaggcgatggaaaattgattta 39863165  T
Q  123 acatctttattcaaagatgtaatcttatctttctcttgatcttgaatctcagcaattttggccctgtcttcttgtagtttt------------------- 203  Q
    || ||||| || |||||||| |||||||||||||||||||||| ||||||| |||||||||| |||||  |||||||||||                       
T  39863166 acttctttgttaaaagatgtgatcttatctttctcttgatcttcaatctcatcaattttggctctgtcaccttgtagtttttcaagcttggctttaagat 39863265  T
Q  204 --gcaatctgagcatcaagagagttgagttctgtttggtggtttgtgaaggaagtcattgagttcaatattttctgtctggtttccttcaatgcttcact 301  Q
      ||||| |||||||||||||||||| ||| |||||| |||||||||| ||||||| | ||| |||||||||| ||||| || ||||||||||||||| |    
T  39863266 cagcaatttgagcatcaagagagttgcgttgtgtttgatggtttgtgagggaagtcttcgaggtcaatattttttgtcttgtctccttcaatgcttcatt 39863365  T
Q  302 atcttggtctgtgct 316  Q
    ||||||||| |||||    
T  39863366 atcttggtcagtgct 39863380  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 203
Target Start/End: Original strand, 39855879 - 39856047
Alignment:
Q  35 ttccaattcagattgagtttccggaatttgatcttcaacacttctcaacttgatttgatcatcaacgaggtgctggaaaattgacttaacatctttattc 134  Q
    ||||||||||| ||| |  ||| | |||| ||||||||| ||  |||||||||||||||||||| ||||| | ||||||||||| ||||| || || ||     
T  39855879 ttccaattcagtttgtgcctccaggattttatcttcaacgctcttcaacttgatttgatcatcagcgaggcgatggaaaattgatttaacttcattgtta 39855978  T
Q  135 aaagatgtaatcttatctttctcttgatcttgaatctcagcaattttggccctgtcttcttgtagtttt 203  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||| |||| |||  |||||||||||    
T  39855979 aaagatgtgatcttatctttctcttgatcttgaatctcagccattttagcccggtcgccttgtagtttt 39856047  T

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Target: chr5; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 53 - 203
Target Start/End: Complemental strand, 38981048 - 38980898
Alignment:
Q  53 ttccggaatttgatcttcaacacttctcaacttgatttgatcatcaacgaggtgctggaaaattgacttaacatctttattcaaagatgtaatcttatct 152  Q
    |||| ||| |||||||||||||||| |||| ||||||||||||||| ||||| | ||||||||||| ||||| ||||| || |||||||  |||||||||    
T  38981048 ttcccgaagttgatcttcaacacttttcaatttgatttgatcatcagcgaggcgatggaaaattgatttaacttctttgtttaaagatgcgatcttatct 38980949  T
Q  153 ttctcttgatcttgaatctcagcaattttggccctgtcttcttgtagtttt 203  Q
    ||||||| |||||||  ||||| || ||||||||| ||  |||||||||||    
T  38980948 ttctctttatcttgaccctcagtaactttggccctctcaacttgtagtttt 38980898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 58 - 171
Target Start/End: Original strand, 39909922 - 39910035
Alignment:
Q  58 gaatttgatcttcaacacttctcaacttgatttgatcatcaacgaggtgctggaaaattgacttaacatctttattcaaagatgtaatcttatctttctc 157  Q
    ||||||||||||||||||||  ||| |||||||||||||||  |||| | ||||||||||| ||||| ||||| ||||||||||  ||| ||||||||||    
T  39909922 gaatttgatcttcaacactttccaatttgatttgatcatcagagaggcgatggaaaattgatttaacttctttgttcaaagatgcgatcctatctttctc 39910021  T
Q  158 ttgatcttgaatct 171  Q
    ||||||||||||||    
T  39910022 ttgatcttgaatct 39910035  T

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Target: chr5; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 204 - 307
Target Start/End: Complemental strand, 38980873 - 38980770
Alignment:
Q  204 gcaatctgagcatcaagagagttgagttctgtttggtggtttgtgaaggaagtcattgagttcaatattttctgtctggtttccttcaatgcttcactat 303  Q
    |||||||||||||||||| |||||||||   |||| |||||||||||| ||||| ||||| |||||||||| ||||| ||||| |||||||||| | |||    
T  38980873 gcaatctgagcatcaagaaagttgagttggttttgatggtttgtgaagaaagtccttgagatcaatattttttgtcttgtttctttcaatgctttattat 38980774  T
Q  304 cttg 307  Q
    ||||    
T  38980773 cttg 38980770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 23 - 203
Target Start/End: Original strand, 39846152 - 39846329
Alignment:
Q  23 cttctcataaccttccaattcagattgagtttccggaatttgatcttcaacacttctcaacttgatttgatcatcaacgaggtgctggaaaattgactta 122  Q
    |||||||| |||||||||||||| ||  |  ||||||||||||||  |||   || ||||||||| |||||||  | ||||| | ||||||||||| |||    
T  39846152 cttctcatgaccttccaattcagtttcggcctccggaatttgatcagcaa---ttttcaacttgacttgatcaatagcgaggcgatggaaaattgattta 39846248  T
Q  123 acatctttattcaaagatgtaatcttatctttctcttgatcttgaatctcagcaattttggccctgtcttcttgtagtttt 203  Q
    || ||||| || | ||| || |||||| ||||||||||| ||| ||||||| |||||||||| || ||  |||||||||||    
T  39846249 acttctttgttaagagacgtgatcttagctttctcttgagcttcaatctcaacaattttggctctttccccttgtagtttt 39846329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 317
Target Start/End: Original strand, 39846351 - 39846464
Alignment:
Q  204 gcaatctgagcatcaagagagttgagttctgtttggtggtttgtgaaggaagtcattgagttcaatattttctgtctggtttccttcaatgcttcactat 303  Q
    |||||||||| |||||||||||||||||||||||||||| |   || ||||||| ||||   ||||||||| ||||| ||  |||||||| | ||| |||    
T  39846351 gcaatctgagtatcaagagagttgagttctgtttggtggatgtcgagggaagtctttgacaacaatattttttgtcttgtcgccttcaattcctcattat 39846450  T
Q  304 cttggtctgtgctc 317  Q
    | ||||| ||||||    
T  39846451 cctggtcggtgctc 39846464  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 53495717 - 53495617
Alignment:
Q  126 tctttattcaaagatgtaatcttatctttctcttgatcttgaatctcagcaattttggccctgtcttcttgtagttttgcaatctgagcatcaagagagt 225  Q
    ||||| ||||||||||| ||||||||||| ||||||||||||||| |||| | ||||||||| ||  ||||||||||| ||| |||| |||||||| |||    
T  53495717 tctttgttcaaagatgtgatcttatctttttcttgatcttgaatcacagccagtttggccctttcaccttgtagtttttcaagctgatcatcaagaaagt 53495618  T
Q  226 t 226  Q
    |    
T  53495617 t 53495617  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 14329318 - 14329415
Alignment:
Q  71 aacacttctcaacttgatttgatcatcaacgaggtgctggaaaattgacttaacatctttattcaaagatgtaatcttatctt-tctcttgatcttga 167  Q
    ||||||| | ||||| |||||||||||||||||||| ||  | ||||| ||||| | | | || |||||||| |||||||||| ||||||||||||||    
T  14329318 aacactttttaactttatttgatcatcaacgaggtgatgatatattgatttaacttttatgttgaaagatgtgatcttatcttgtctcttgatcttga 14329415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 14422328 - 14422425
Alignment:
Q  71 aacacttctcaacttgatttgatcatcaacgaggtgctggaaaattgacttaacatctttattcaaagatgtaatcttatctt-tctcttgatcttga 167  Q
    ||||||| | ||||| |||||||||||||||||||| ||  | ||||| ||||| | | | || |||||||| |||||||||| ||||||||||||||    
T  14422328 aacactttttaactttatttgatcatcaacgaggtgatgatatattgatttaacttttatgttgaaagatgtgatcttatcttgtctcttgatcttga 14422425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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