View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11622_low_29 (Length: 316)

Name: NF11622_low_29
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11622_low_29
NF11622_low_29
[»] chr1 (1 HSPs)
chr1 (8-301)||(31033191-31033484)


Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 31033191 - 31033484
Alignment:
Q  8 aaaaatttagaattgacatcaacttcctttaaccaatctattctaagttttttgcgactgaatacctgaatgcaatttgaataaagttgtttcatctgtt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  31033191 aaaaatttagaattgacatcaacttcctttaaccaatctattctaagttttttgcgactgaatacctgaatgcaatttgaataaagttgtttcatctgct 31033290  T
Q  108 gataaagaatgaagctcttccatctcctccgcttgaatcatttgcannnnnnntttaatatccaagaaagacatacaatctttaaccaaccgaattcttc 207  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||       ||||||||||||||||||||||| ||||||||||||||||||||| |    
T  31033291 gataaagaatgaaactcttccatctcatccgcttgaatcatttgcacctcccctttaatatccaagaaagacatacgatctttaaccaaccgaattctac 31033390  T
Q  208 cttctatgttttgggtatggctttgatgccaactcttcagacatcccttatcagtttaaatttctctttcaacacataaccactccacccatgt 301  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31033391 cttctaagttttgggtatggttttgatgccaactcttcagacatcccttatcagtttaaatttctctttcaacacataaccactccacccatgt 31033484  T

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