View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11622_low_30 (Length: 313)
Name: NF11622_low_30
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 7240811 - 7241100
Alignment:
| Q |
16 |
tggacatcagttcgaaggagagagaataagcttccgaatagagacttgtnnnnnnnnnngaagtatccgagtagaaagaaaaacgatttaaagctcataa |
115 |
Q |
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| T |
7240811 |
tggacattagttcgaaggagagagaataagcttccaagtagagacttgtaaaaaaaaaa-aagtatccgagtagaaagaaaaatgatttaaagctcataa |
7240909 |
T |
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| Q |
116 |
accataaaaatacacaatgtgaaaccatataaatactcaatgtctctgttcaattttgtttcaaaaaacattcctccataaaatagagataaggaaaggg |
215 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7240910 |
accataaaattacacaatgtgaaaccatataaatactcaatgtctctgttcaattttgtttcaaaaaacattcctccataaaatagagataaggaaacat |
7241009 |
T |
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| Q |
216 |
g------------------agtcttcagcaacaatacgtttgagtattgcatagagaaaaggggagtttctttttctatctcccacaaaaa |
288 |
Q |
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| T |
7241010 |
gtaagcctcaacacactttagtcttcagcaacaatacgtttgagtattgcatagagaaaaggggagtttctttttctatctccaacaaaaa |
7241100 |
T |
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