View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11622_low_35 (Length: 279)
Name: NF11622_low_35
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_low_35 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 26119637 - 26119881
Alignment:
| Q |
16 |
ataggtgctcgttaagtttttgaacaacagcttagacaaaaacaaggttatcgaggtgtgccatcgggaaaaggtttgagagcctcttgtttcccattaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
26119637 |
ataggtgctcgttaagtttttgaacaacagcttagacataa-caaggttatcgaggtgtgccatcgggaaaaggtttgagagcatcttggttcccattaa |
26119735 |
T |
|
| Q |
116 |
cataatattcaacaactgctttcattcgcggaagcttatcacggtggtaattcacgtgaataattaccggtttcaatttactgaggttagcatcgttcct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
26119736 |
cataatattcaacaactgctttcattcgcgtaagcttatcacggtggtaattcaagtgaataataaccggtttcaatttactgaggttagcattgttcct |
26119835 |
T |
|
| Q |
216 |
caccgtcttgaaaagaactctgctgttcataaaaagatatatatcc |
261 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
26119836 |
cactgtcttgaaaagaactctgctattcataaaaagatatatatcc |
26119881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 29 - 261
Target Start/End: Original strand, 26096360 - 26096594
Alignment:
| Q |
29 |
aagtttttgaacaacagcttagaca--aaaacaaggttatcgaggtgtgccatcgggaaaaggtttgagagcctcttgtttcccattaacataatattca |
126 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
26096360 |
aagtttttgaacaacaacttagacacaaaaacaaggttatcgaggtgtgccatcgggaaaaggtttgagagcatcttggttcccattaacataatattca |
26096459 |
T |
|
| Q |
127 |
acaactgctttcattcgcggaagcttatcacggtggtaattcacgtgaataattaccggtttcaatttactgaggttagcatcgttcctcaccgtcttga |
226 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
26096460 |
acaattgctttcattcgccgaagcttatcacggtggtaattcaagtgaataattaccggtttcaatttactgaggttagcatcgttcctcactgtcctga |
26096559 |
T |
|
| Q |
227 |
aaagaactctgctgttcataaaaagatatatatcc |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
26096560 |
aaagaactctgctgttcataaaaagatatatatcc |
26096594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 261
Target Start/End: Original strand, 26084077 - 26084319
Alignment:
| Q |
21 |
tgctcgttaagtttttgaacaacagcttagacaaa--aacaaggttatcgaggtgtgccatcgggaaaaggtttgagagcctcttgtttcccattaacat |
118 |
Q |
| |
|
|||| |||||||||| |||||||| || ||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
26084077 |
tgctggttaagttttagaacaacaactaagacatagaaacaaggttatcgaggtgtgccatcgggaaaaggtttgagagcatcttggttcccattaacat |
26084176 |
T |
|
| Q |
119 |
aatattcaacaactgctttcattcgcggaagcttatcacggtggtaattcacgtgaataattaccggtttcaatttactgaggttagcatcgttcctcac |
218 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26084177 |
agtattcaacaactgctttcattcgcggaagcttatcacggtggtaattcacgtgaataataaccggtttcaatttactgaggttagcatcgttcctcac |
26084276 |
T |
|
| Q |
219 |
cgtcttgaaaagaactctgctgttcataaaaagatatatatcc |
261 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26084277 |
tgtcctgaaaagaactctgctgttcataaaaagatatatatcc |
26084319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 26126291 - 26126538
Alignment:
| Q |
16 |
ataggtgctcgttaagtttttgaacaacagcttagacaaa--aacaaggttatcgaggtgtgccatcgggaaaaggtttgagagcctcttgtttcccatt |
113 |
Q |
| |
|
||||||||||||||||| |||||| |||| || ||||| | |||||||||||| |||||||||||| | |||||||||||||| ||||| |||||||| |
|
|
| T |
26126291 |
ataggtgctcgttaagtatttgaagaacaactaagacacagaaacaaggttatcaaggtgtgccatccgagaaaggtttgagagcatcttggttcccatt |
26126390 |
T |
|
| Q |
114 |
aacataatattcaacaactgctttcattcgcggaagcttatcacggtggtaattcacgtgaataattaccggtttcaatttactgaggttagcatcgttc |
213 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26126391 |
aacatagtattcaacaactgctttcattcgcggaagcttatcagggtggtaattcaagtgaataattaccggtttcaatttactgagtttagcatcgttc |
26126490 |
T |
|
| Q |
214 |
ctcaccgtcttgaaaagaactctgctgttcataaaaagatatatatcc |
261 |
Q |
| |
|
||||| ||||||||||||||| | || ||||||||||||||||||||| |
|
|
| T |
26126491 |
ctcactgtcttgaaaagaactttactattcataaaaagatatatatcc |
26126538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 75 - 261
Target Start/End: Original strand, 26064408 - 26064594
Alignment:
| Q |
75 |
gccatcgggaaaaggtttgagagcctcttgtttcccattaacataatattcaacaactgctttcattcgcggaagcttatcacggtggtaattcacgtga |
174 |
Q |
| |
|
|||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26064408 |
gccatcagggaaaggtttgagagcatcttggttcccattaacataatattcaacaactgctttcattcgcggaagcttatcagggtggtaattcacgtga |
26064507 |
T |
|
| Q |
175 |
ataattaccggtttcaatttactgaggttagcatcgttcctcaccgtcttgaaaagaactctgctgttcataaaaagatatatatcc |
261 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| | || ||||||||||| || |||||| |
|
|
| T |
26064508 |
ataattaccggtttcaatttactgagtttagcatcgttcctcactgtcttgaaaagaactttactattcataaaaaggtacatatcc |
26064594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 85 - 261
Target Start/End: Original strand, 26035770 - 26035946
Alignment:
| Q |
85 |
aaaggtttgagagcctcttgtttcccattaacataatattcaacaactgctttcattcgcggaagcttatcacggtggtaattcacgtgaataattaccg |
184 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||| | |
|
|
| T |
26035770 |
aaaggtttgagagcatcttgtttcccattgacataatattcgacaactgctttcattcgcggaagcttatcagggtggtaattcacgtgaacaattactg |
26035869 |
T |
|
| Q |
185 |
gtttcaatttactgaggttagcatcgttcctcaccgtcttgaaaagaactctgctgttcataaaaagatatatatcc |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||| |
|
|
| T |
26035870 |
gtttcaatttactgaggttagcatcgttcctcactgtcttgaaaagaactttgctgttcataaagagatacatatcc |
26035946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 26 - 218
Target Start/End: Original strand, 26075488 - 26075682
Alignment:
| Q |
26 |
gttaagtttttgaacaacagcttagacaaa--aacaaggttatcgaggtgtgccatcgggaaaaggtttgagagcctcttgtttcccattaacataatat |
123 |
Q |
| |
|
|||| |||||||||||||| || ||||| | |||||||||||||| |||||||||||||||||||||| ||||| |||| |||||||||||||||||| |
|
|
| T |
26075488 |
gttatgtttttgaacaacaactaagacatagaaacaaggttatcgatgtgtgccatcgggaaaaggtttcagagcatcttagttcccattaacataatat |
26075587 |
T |
|
| Q |
124 |
tcaacaactgctttcattcgcggaagcttatcacggtggtaattcacgtgaataattaccggtttcaatttactgaggttagcatcgttcctcac |
218 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26075588 |
tcaacaactgctttcattcgccgaagcttatcacggtggtaattcaagtgaataataaccggtttcaatttactgaggttagcatcgttcctcac |
26075682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University