View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11622_low_37 (Length: 269)

Name: NF11622_low_37
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11622_low_37
NF11622_low_37
[»] chr5 (22 HSPs)
chr5 (168-250)||(23247351-23247433)
chr5 (168-232)||(5079374-5079438)
chr5 (177-250)||(3653922-3653996)
chr5 (191-255)||(38897742-38897806)
chr5 (187-250)||(18262637-18262700)
chr5 (192-255)||(37263260-37263323)
chr5 (191-250)||(42086352-42086411)
chr5 (187-250)||(42291524-42291587)
chr5 (168-232)||(2485239-2485304)
chr5 (191-247)||(14588640-14588696)
chr5 (187-255)||(41800997-41801065)
chr5 (191-250)||(7866606-7866665)
chr5 (191-250)||(9805029-9805088)
chr5 (187-250)||(11845820-11845883)
chr5 (187-250)||(24875370-24875433)
chr5 (192-250)||(20682641-20682699)
chr5 (192-250)||(24463910-24463968)
chr5 (177-217)||(21487672-21487713)
chr5 (202-250)||(25417217-25417265)
chr5 (168-231)||(27648424-27648488)
chr5 (174-217)||(38296735-38296779)
chr5 (187-255)||(38369719-38369787)
[»] chr7 (18 HSPs)
chr7 (168-255)||(34659248-34659336)
chr7 (168-250)||(17748381-17748464)
chr7 (187-255)||(3353446-3353514)
chr7 (191-250)||(38578890-38578949)
chr7 (187-250)||(48551884-48551947)
chr7 (177-254)||(1797483-1797561)
chr7 (191-243)||(4973133-4973185)
chr7 (168-231)||(5069814-5069878)
chr7 (190-250)||(30827319-30827379)
chr7 (191-247)||(41945503-41945559)
chr7 (168-238)||(4705983-4706054)
chr7 (187-250)||(19914722-19914785)
chr7 (191-250)||(28744189-28744248)
chr7 (187-230)||(49142688-49142731)
chr7 (177-254)||(26423296-26423373)
chr7 (191-232)||(43346802-43346843)
chr7 (187-231)||(14535337-14535381)
chr7 (168-251)||(42210261-42210345)
[»] chr4 (18 HSPs)
chr4 (179-254)||(5472858-5472934)
chr4 (168-250)||(17080072-17080155)
chr4 (168-250)||(30317262-30317345)
chr4 (197-254)||(55005335-55005392)
chr4 (177-232)||(1940785-1940841)
chr4 (187-255)||(24166474-24166542)
chr4 (168-247)||(43458645-43458725)
chr4 (191-255)||(49260688-49260752)
chr4 (191-250)||(7246669-7246728)
chr4 (195-254)||(24479011-24479070)
chr4 (191-250)||(38166056-38166115)
chr4 (188-254)||(36145235-36145301)
chr4 (191-250)||(20532432-20532491)
chr4 (191-250)||(36262790-36262849)
chr4 (195-250)||(50485972-50486027)
chr4 (187-229)||(48317294-48317336)
chr4 (177-232)||(14597908-14597964)
chr4 (191-255)||(40780884-40780948)
[»] chr3 (24 HSPs)
chr3 (191-254)||(28572235-28572298)
chr3 (191-254)||(43330756-43330819)
chr3 (191-255)||(8164572-8164636)
chr3 (174-252)||(4638176-4638255)
chr3 (195-254)||(50405631-50405690)
chr3 (168-256)||(47749105-47749194)
chr3 (187-255)||(47219163-47219231)
chr3 (191-250)||(7648764-7648823)
chr3 (168-250)||(13893950-13894033)
chr3 (191-250)||(32873573-32873632)
chr3 (168-232)||(29127961-29128026)
chr3 (191-231)||(15320229-15320269)
chr3 (187-231)||(26361987-26362031)
chr3 (191-231)||(30767271-30767311)
chr3 (191-255)||(41630536-41630600)
chr3 (191-250)||(3507557-3507616)
chr3 (168-250)||(7328868-7328950)
chr3 (191-250)||(7650251-7650310)
chr3 (195-250)||(51682982-51683037)
chr3 (187-250)||(52364820-52364883)
chr3 (187-252)||(2029287-2029352)
chr3 (168-248)||(23511593-23511674)
chr3 (168-231)||(7310703-7310767)
chr3 (191-255)||(10040575-10040639)
[»] chr1 (23 HSPs)
chr1 (187-250)||(14254288-14254351)
chr1 (174-250)||(10336541-10336618)
chr1 (192-250)||(18649377-18649435)
chr1 (192-250)||(43959846-43959904)
chr1 (187-232)||(6899601-6899646)
chr1 (168-232)||(32150922-32150987)
chr1 (168-250)||(32142846-32142929)
chr1 (191-249)||(37339846-37339904)
chr1 (187-248)||(33498859-33498920)
chr1 (191-255)||(9659203-9659267)
chr1 (168-250)||(5143154-5143236)
chr1 (191-250)||(16956491-16956550)
chr1 (191-250)||(17642028-17642087)
chr1 (195-254)||(33004043-33004102)
chr1 (168-250)||(46929738-46929821)
chr1 (191-250)||(50371858-50371917)
chr1 (195-250)||(50503389-50503444)
chr1 (191-249)||(33418139-33418197)
chr1 (205-250)||(18808290-18808335)
chr1 (187-251)||(5504055-5504119)
chr1 (201-253)||(12150760-12150812)
chr1 (187-231)||(34697379-34697423)
chr1 (191-247)||(34719804-34719860)
[»] scaffold0209 (1 HSPs)
scaffold0209 (187-250)||(12600-12663)
[»] chr8 (14 HSPs)
chr8 (187-250)||(583840-583903)
chr8 (168-247)||(16893968-16894046)
chr8 (191-250)||(43032929-43032988)
chr8 (177-250)||(18374038-18374112)
chr8 (187-253)||(35496274-35496340)
chr8 (191-232)||(15884579-15884620)
chr8 (168-250)||(22212514-22212598)
chr8 (187-255)||(45521191-45521259)
chr8 (191-250)||(2964104-2964163)
chr8 (168-250)||(43027333-43027416)
chr8 (193-251)||(18091427-18091485)
chr8 (191-255)||(4479319-4479383)
chr8 (195-255)||(6042844-6042904)
chr8 (168-215)||(26570987-26571035)
[»] chr6 (10 HSPs)
chr6 (191-250)||(9633648-9633707)
chr6 (191-250)||(12606458-12606517)
chr6 (187-250)||(2271322-2271385)
chr6 (191-250)||(3601112-3601171)
chr6 (191-250)||(30788876-30788935)
chr6 (178-255)||(8888905-8888983)
chr6 (196-254)||(12635838-12635896)
chr6 (197-250)||(14107387-14107440)
chr6 (189-250)||(17114918-17114979)
chr6 (177-232)||(13391332-13391388)
[»] chr2 (26 HSPs)
chr2 (168-250)||(16034961-16035044)
chr2 (192-250)||(10823084-10823142)
chr2 (177-243)||(7787087-7787154)
chr2 (168-254)||(18846220-18846307)
chr2 (174-252)||(20963115-20963194)
chr2 (191-250)||(25540427-25540486)
chr2 (192-253)||(9360772-9360833)
chr2 (195-256)||(35946756-35946817)
chr2 (168-232)||(37560215-37560280)
chr2 (174-250)||(42770656-42770733)
chr2 (191-255)||(16813188-16813252)
chr2 (191-255)||(16852467-16852531)
chr2 (187-231)||(29422258-29422302)
chr2 (191-255)||(38005421-38005485)
chr2 (192-232)||(44945635-44945675)
chr2 (191-250)||(8410155-8410214)
chr2 (195-254)||(12455330-12455389)
chr2 (191-250)||(18902553-18902612)
chr2 (187-254)||(28525474-28525541)
chr2 (187-250)||(34722704-34722767)
chr2 (195-250)||(44139508-44139563)
chr2 (202-252)||(21286466-21286516)
chr2 (197-255)||(43303321-43303379)
chr2 (174-230)||(26805340-26805397)
chr2 (191-255)||(10046500-10046563)
chr2 (191-231)||(41031929-41031969)
[»] scaffold0004 (1 HSPs)
scaffold0004 (195-253)||(95008-95066)
[»] scaffold0006 (1 HSPs)
scaffold0006 (177-232)||(68559-68615)
[»] scaffold0376 (1 HSPs)
scaffold0376 (187-250)||(12697-12760)
[»] scaffold0170 (1 HSPs)
scaffold0170 (191-250)||(9872-9931)
[»] scaffold0010 (1 HSPs)
scaffold0010 (191-250)||(155734-155793)
[»] scaffold0116 (1 HSPs)
scaffold0116 (174-254)||(17413-17494)
[»] scaffold0029 (1 HSPs)
scaffold0029 (191-231)||(41090-41130)
[»] scaffold0005 (1 HSPs)
scaffold0005 (177-232)||(219414-219470)


Alignment Details
Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 23247351 - 23247433
Alignment:
Q  168 ctttcccatcggttttcgaccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||| || ||||||||||||||||||||||| ||||||||| ||||||| |||| |||||||| || || ||||||||||||    
T  23247351 ctttcgcaccggttttcgaccatcaaaggtggacgactaatctggctcgtgcgtagaggcatgcatactgatcaagcgttgtt 23247433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 5079438 - 5079374
Alignment:
Q  168 ctttcccatcggttttcgaccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcg 232  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||| |||| | |||||||    
T  5079438 ctttcgcaccggttttcgaccaccaaaggtgggcgactaatccggctcgtgcgtagaagcatgcg 5079374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 3653922 - 3653996
Alignment:
Q  177 cggttttcga-ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    |||||||||| ||| ||||||||| ||||||||||| ||||| |||| ||||||||| | |||||||||||||||    
T  3653922 cggttttcgatccaccaaaggtggacgactaatccgcctcgtgcgtagaggcatgcgcactggtcaagcgttgtt 3653996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 38897742 - 38897806
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccct 255  Q
    ||||||||||| ||||||||||||||| |||| ||||||||| | ||| ||||||||||| ||||    
T  38897742 caaaggtgggcaactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttcccct 38897806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 18262637 - 18262700
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    |||||| ||||||||||||||||||||||||  ||| ||| ||||| | |||||||||||||||    
T  18262637 ccatcagaggtgggcgactaatccggctcgtgtgtagaggtatgcgcactggtcaagcgttgtt 18262700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 255
Target Start/End: Complemental strand, 37263323 - 37263260
Alignment:
Q  192 aaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccct 255  Q
    |||||||| ||||||||||||||||| |||| ||||||||| | ||| ||||||||||| ||||    
T  37263323 aaaggtggacgactaatccggctcgtgcgtagaggcatgcgcattggccaagcgttgttcccct 37263260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 42086411 - 42086352
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||| ||||||||||||||| | |||| ||||||||| | |||||||||||||||    
T  42086411 caaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgtt 42086352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 42291524 - 42291587
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||| ||||||||||||||||| |||| ||||||| | | ||| |||||||||||    
T  42291524 ccatcaaaggtggacgactaatccggctcgtgcgtagaggcatgtgcactggccaagcgttgtt 42291587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 2485304 - 2485239
Alignment:
Q  168 ctttcccatcggttttcgacc-atcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcg 232  Q
    ||||| ||||||||| ||||| |||||||||| |||||||||||| ||| |||||| |||||||||    
T  2485304 ctttcgcatcggtttccgacccatcaaaggtgagcgactaatccgactcatacgtagaggcatgcg 2485239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 14588640 - 14588696
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgtt 247  Q
    ||||||||| ||||||||||||||| | |||| ||||||||| | ||||||||||||    
T  14588640 caaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgtt 14588696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 41801065 - 41800997
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccct 255  Q
    ||||||||| ||  ||||||||||||||||| |||| || |||||| | ||||||||||||||| ||||    
T  41801065 ccatcaaagatgaacgactaatccggctcgtgcgtagagacatgcgcattggtcaagcgttgttcccct 41800997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 7866665 - 7866606
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    |||||||||||||||||||||| |||| |||| ||||||||  | ||| |||||||||||    
T  7866665 caaaggtgggcgactaatccggttcgtgcgtagaggcatgcacactggccaagcgttgtt 7866606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 9805088 - 9805029
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||| ||||||||||||||| | |||| ||||||||| | ||| |||||||||||    
T  9805088 caaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgtt 9805029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 11845820 - 11845883
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||||||| |||| |||||| |||||| ||||||||| | ||| ||| |||||||    
T  11845820 ccatcaaaggtgggcgattaattcggctcatacgtagaggcatgcgcactggccaaacgttgtt 11845883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 24875433 - 24875370
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||| ||| ||||||||||||| |||| || |||||| | ||||||| |||||||    
T  24875433 ccatcaaaggtggacgattaatccggctcgtgcgtagagacatgcgcactggtcaaacgttgtt 24875370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 20682641 - 20682699
Alignment:
Q  192 aaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    |||||||| ||| ||||||||||||| |||| ||||||||| | ||| |||||||||||    
T  20682641 aaaggtggtcgattaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtt 20682699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 24463910 - 24463968
Alignment:
Q  192 aaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    |||||||||||||||||||||||||| | || ||||||||| | ||| ||| |||||||    
T  24463910 aaaggtgggcgactaatccggctcgtgcatagaggcatgcgcactggccaatcgttgtt 24463968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 217
Target Start/End: Complemental strand, 21487713 - 21487672
Alignment:
Q  177 cggttttcgacc-atcaaaggtgggcgactaatccggctcgt 217  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  21487713 cggttttcgacccattaaaggtgggcgactaatccggctcgt 21487672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 25417217 - 25417265
Alignment:
Q  202 gactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    |||||||||||||||| |||| ||||||||| | ||| |||||||||||    
T  25417217 gactaatccggctcgttcgtagaggcatgcgcactggccaagcgttgtt 25417265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 27648424 - 27648488
Alignment:
Q  168 ctttcccatcggttttcga-ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgc 231  Q
    ||||| ||||||||| ||| ||| ||||| ||| ||||||||||||||| |||||| ||||||||    
T  27648424 ctttcgcatcggtttccgatccaccaaagatggacgactaatccggctcatacgtagaggcatgc 27648488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 217
Target Start/End: Original strand, 38296735 - 38296779
Alignment:
Q  174 catcggttttcgacc-atcaaaggtgggcgactaatccggctcgt 217  Q
    ||||||||| ||||| ||||||||||||||||||||||| |||||    
T  38296735 catcggtttccgacccatcaaaggtgggcgactaatccgactcgt 38296779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 38369787 - 38369719
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccct 255  Q
    ||||||||||||||  ||||||||| ||||| |||| ||||||||| | ||| |||| |||||| ||||    
T  38369787 ccatcaaaggtgggttactaatccgactcgtgcgtagaggcatgcgcactggccaagtgttgttcccct 38369719  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 255
Target Start/End: Complemental strand, 34659336 - 34659248
Alignment:
Q  168 ctttcccatcggttttcgac-catcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccct 255  Q
    ||||| || ||||||||||| || ||| ||||||||||||||||||||||| |||| ||||||||| | ||||||||||||||| ||||    
T  34659336 ctttcgcaccggttttcgacacaccaatggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggtcaagcgttgttcccct 34659248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 17748381 - 17748464
Alignment:
Q  168 ctttcccatcggttttcgacc-atcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||| ||||||||| ||||| | ||||||||| |||||||||||||||||||||| ||||||||| | ||| |||||||||||    
T  17748381 ctttcgcatcggtttccgacccaacaaaggtggacgactaatccggctcgtacgtagaggcatgcgcactggccaagcgttgtt 17748464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 3353514 - 3353446
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccct 255  Q
    ||||||||||||| ||||||||||||||||| |||| ||||||||| | ||| |||  |||||||||||    
T  3353514 ccatcaaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaaatgttgtttccct 3353446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 38578890 - 38578949
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||||||||||||||| | |||| ||||||||| | ||| |||||||||||    
T  38578890 caaaggtgggcgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgtt 38578949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 48551947 - 48551884
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||| ||||||||||||||| |||||| ||||||||| | ||| ||| |||||||    
T  48551947 ccatcaaaggtggacgactaatccggctcatacgtagaggcatgcgcattggccaaccgttgtt 48551884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 254
Target Start/End: Complemental strand, 1797561 - 1797483
Alignment:
Q  177 cggttttcga-ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccc 254  Q
    |||||||||| ||||||||| ||| |||||| |||||||||| |||| || |||||| | ||| |||||||||||||||    
T  1797561 cggttttcgatccatcaaagatggacgactagtccggctcgtgcgtagagacatgcgcactggccaagcgttgtttccc 1797483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 4973133 - 4973185
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaag 243  Q
    ||||| ||| |||||||||||||||||||||| ||||||||| | ||||||||    
T  4973133 caaagctggacgactaatccggctcgtacgtagaggcatgcgcattggtcaag 4973185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 5069814 - 5069878
Alignment:
Q  168 ctttcccatcggttttcgacc-atcaaaggtgggcgactaatccggctcgtacgtaaaggcatgc 231  Q
    ||||| ||||||||| ||||| | |||||||||||||||||||||||| || |||| ||||||||    
T  5069814 ctttcgcatcggtttccgacccaccaaaggtgggcgactaatccggcttgtgcgtagaggcatgc 5069878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 30827379 - 30827319
Alignment:
Q  190 tcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    |||||||| | ||||||||||||||||| |||| ||||||||||| ||| |||| ||||||    
T  30827379 tcaaaggtagacgactaatccggctcgtgcgtagaggcatgcgtactggccaagtgttgtt 30827319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 41945559 - 41945503
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgtt 247  Q
    ||||||||| ||||||||||||||||| |||| ||||||||| | ||| ||||||||    
T  41945559 caaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgtt 41945503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 4705983 - 4706054
Alignment:
Q  168 ctttcccatcggttttcgacc-atcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatgg 238  Q
    ||||| ||||||||||||| | | ||||||||| |||||||||| |||||| |||| | |||||||||||||    
T  4705983 ctttcacatcggttttcgatctaccaaaggtggacgactaatccagctcgtgcgtagaagcatgcgtaatgg 4706054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 19914722 - 19914785
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||||||| ||||| ||||| | |||| ||||||||| | ||| |||||||||||    
T  19914722 ccatcaaaggtgggcgattaatctggctcatgcgtagaggcatgcgcattggccaagcgttgtt 19914785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 28744248 - 28744189
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||| |||||||||||||||||| ||| ||| ||||||| ||| ||||| |||||    
T  28744248 caaaggtggacgactaatccggctcgtatgtagaggtatgcgtactggccaagcattgtt 28744189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 49142688 - 49142731
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatg 230  Q
    ||||||||||||||| ||||||||||||||| |||| |||||||    
T  49142688 ccatcaaaggtgggcaactaatccggctcgtgcgtagaggcatg 49142731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 254
Target Start/End: Original strand, 26423296 - 26423373
Alignment:
Q  177 cggttttcgaccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccc 254  Q
    |||||| |||||| ||||||||  ||||||||| ||||||| |||| ||||| | | | ||| |||||||||||||||    
T  26423296 cggtttccgaccaccaaaggtgaacgactaatctggctcgtgcgtagaggcaggtgcactggccaagcgttgtttccc 26423373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 43346802 - 43346843
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcg 232  Q
    ||||| || ||||||||||||||||||||||| |||||||||    
T  43346802 caaagatgagcgactaatccggctcgtacgtagaggcatgcg 43346843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 14535381 - 14535337
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgc 231  Q
    ||||||| |||||||||||||||| |||||| |||| ||||||||    
T  14535381 ccatcaatggtgggcgactaatccagctcgtgcgtagaggcatgc 14535337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 251
Target Start/End: Original strand, 42210261 - 42210345
Alignment:
Q  168 ctttcccatcggttttcgacc-atcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgttt 251  Q
    ||||| ||||||||| ||||| | ||| |||||| || ||||||||||||| |||| ||||||||| | ||| ||| ||||||||    
T  42210261 ctttcgcatcggtttccgacccaccaacggtgggtgattaatccggctcgtgcgtagaggcatgcgcactggccaaacgttgttt 42210345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 254
Target Start/End: Original strand, 5472858 - 5472934
Alignment:
Q  179 gttttcgacc-atcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccc 254  Q
    |||||||||| | ||||||||||||||||||||||||||| |||| ||||||||| | ||| |||||||||||||||    
T  5472858 gttttcgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtttccc 5472934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 17080155 - 17080072
Alignment:
Q  168 ctttcccatcggttttcga-ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||| || |||||||||| |||||||||||| |||||||||||||||| | |||| ||||||||| | ||| |||||||||||    
T  17080155 ctttcgcaccggttttcgatccatcaaaggtgtgcgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgtt 17080072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 30317345 - 30317262
Alignment:
Q  168 ctttcccatcggttttcgacc-atcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||| ||||||||| ||||| | |||||||||||||||||| |||||||| |||| |||||| |||| ||| |||||||||||    
T  30317345 ctttcacatcggtttccgacccaccaaaggtgggcgactaattcggctcgtgcgtagaggcattcgtactggccaagcgttgtt 30317262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 55005335 - 55005392
Alignment:
Q  197 tgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccc 254  Q
    ||||||||||||||| || || |||| ||||||||| |||||||||||||||||||||    
T  55005335 tgggcgactaatccgacttgtgcgtagaggcatgcgcaatggtcaagcgttgtttccc 55005392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 1940785 - 1940841
Alignment:
Q  177 cggttttcgacc-atcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcg 232  Q
    |||||||||||| | ||||||||||||||||||||||||||| |||| |||||||||    
T  1940785 cggttttcgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcg 1940841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 24166542 - 24166474
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccct 255  Q
    |||||||||||||| |||||||| ||||||| |||| ||||||||| | ||| ||| ||||||||||||    
T  24166542 ccatcaaaggtgggtgactaatctggctcgtgcgtagaggcatgcgcactggccaaacgttgtttccct 24166474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 43458725 - 43458645
Alignment:
Q  168 ctttcccatcggttttcgac-catcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgtt 247  Q
    ||||| || |||||| |||| |||||||||||| ||||||||||||||||| |||| ||||||||| | ||| ||||||||    
T  43458725 ctttcgcaacggtttccgactcatcaaaggtggacgactaatccggctcgtccgtagaggcatgcgcactggccaagcgtt 43458645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 49260688 - 49260752
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccct 255  Q
    ||||||||| ||||||||||||||||| |||| ||||||||| | ||| ||||||||||| ||||    
T  49260688 caaaggtggtcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgttcccct 49260752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 7246669 - 7246728
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||||||||||||||| | |||| ||||||||| | ||| |||||||||||    
T  7246669 caaaggtgggcgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttgtt 7246728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 254
Target Start/End: Original strand, 24479011 - 24479070
Alignment:
Q  195 ggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccc 254  Q
    ||||||||| |||||||||||||  ||| |||| || |||||||||||||||||||||||    
T  24479011 ggtgggcgattaatccggctcgtgtgtagaggcgtgtgtaatggtcaagcgttgtttccc 24479070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 38166115 - 38166056
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||||||||||||||||| |||| || |||||| | ||| |||||||||||    
T  38166115 caaaggtgggcgactaatccggctcgtgcgtagagccatgcgcactggccaagcgttgtt 38166056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 36145235 - 36145301
Alignment:
Q  188 catcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccc 254  Q
    |||||||||||| ||||||||||||||| |  ||| ||||||||| | || ||||||||||||||||    
T  36145235 catcaaaggtggacgactaatccggctcatgtgtagaggcatgcgcactgatcaagcgttgtttccc 36145301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 20532432 - 20532491
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||||| ||||||||| | |||| ||||||||| | ||| |||||||||||    
T  20532432 caaaggtgggcgacttatccggctcatgcgtagaggcatgcgcactggccaagcgttgtt 20532491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 36262790 - 36262849
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||||||||||| ||||| |||| ||||||| | | ||| |||||||||||    
T  36262790 caaaggtgggcgactaatccgactcgtgcgtagaggcatgtgcactggccaagcgttgtt 36262849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 50486027 - 50485972
Alignment:
Q  195 ggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||||||||||||| |||| ||||||||||  ||| ||| |||||||    
T  50486027 ggtgggcgactaatccggctcgtgcgtagaggcatgcgttctggccaatcgttgtt 50485972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 48317294 - 48317336
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcat 229  Q
    ||||||| ||||||||||||||||||||||| |||| ||||||    
T  48317294 ccatcaacggtgggcgactaatccggctcgtgcgtagaggcat 48317336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 232
Target Start/End: Original strand, 14597908 - 14597964
Alignment:
Q  177 cggttttcga-ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcg 232  Q
    |||||||||| ||||||||||||| |||||||||| | |||| |||| |||||||||    
T  14597908 cggttttcgatccatcaaaggtggacgactaatccagttcgtgcgtagaggcatgcg 14597964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 40780884 - 40780948
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccct 255  Q
    ||||||||| ||||||||||||||| | |||| ||||||||| | ||  ||||||||||| ||||    
T  40780884 caaaggtggacgactaatccggctcatgcgtagaggcatgcgcactgaccaagcgttgttcccct 40780948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 28572235 - 28572298
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccc 254  Q
    ||||||||||||||||||||||||||| |||| |||||||| || ||| |||||||||||||||    
T  28572235 caaaggtgggcgactaatccggctcgtgcgtagaggcatgcatactggccaagcgttgtttccc 28572298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 43330756 - 43330819
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccc 254  Q
    ||||||||||||||||||||||||||| |||| ||||||||| | |||||||| ||||||||||    
T  43330756 caaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggtcaagtgttgtttccc 43330819  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 8164636 - 8164572
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccct 255  Q
    ||||||||||||||||||||| ||||| |||||||||||||| | ||| ||||||||||| ||||    
T  8164636 caaaggtgggcgactaatccgactcgtgcgtaaaggcatgcgcactggccaagcgttgttcccct 8164572  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 252
Target Start/End: Complemental strand, 4638255 - 4638176
Alignment:
Q  174 catcggttttcgacc-atcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttc 252  Q
    ||||||||| ||||| || |||||||||| ||||||||||||||| |||| ||| ||||| | |||||||||||||||||    
T  4638255 catcggtttccgacccattaaaggtgggctactaatccggctcgtgcgtagaggtatgcgcactggtcaagcgttgtttc 4638176  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 254
Target Start/End: Original strand, 50405631 - 50405690
Alignment:
Q  195 ggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccc 254  Q
    ||||||||||||||||| ||||| |||| ||||||||| | |||||||||||||||||||    
T  50405631 ggtgggcgactaatccgactcgtgcgtagaggcatgcgcactggtcaagcgttgtttccc 50405690  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 47749105 - 47749194
Alignment:
Q  168 ctttcccatcggttttcgacc-atcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttcccta 256  Q
    ||||| ||||||||| ||||| | |||||||||||||||||| |||||||| |||| ||||||||| | ||| |||| |||||| |||||    
T  47749105 ctttcgcatcggtttccgacctaccaaaggtgggcgactaattcggctcgtgcgtagaggcatgcgcactggccaagagttgttccccta 47749194  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 47219231 - 47219163
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccct 255  Q
    ||||||||||||| ||||||||||||||| | |||| ||||||||| | | | ||||||||||||||||    
T  47219231 ccatcaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactagccaagcgttgtttccct 47219163  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 7648823 - 7648764
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||||||||||||||||| |||| ||| ||||| | ||||||| |||||||    
T  7648823 caaaggtgggcgactaatccggctcgtgcgtagaggtatgcgcactggtcaaacgttgtt 7648764  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 13894033 - 13893950
Alignment:
Q  168 ctttcccatcggttttcga-ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||| || |||||||||| ||| |||||||||||||||||||||||||||  ||| ||||||||| | ||  |||||||||||    
T  13894033 ctttcgcaccggttttcgatccaccaaaggtgggcgactaatccggctcgtgtgtagaggcatgcgcattgaccaagcgttgtt 13893950  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 32873573 - 32873632
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||||||||| ||||| |||||| ||||||| | | |||||||||||||||    
T  32873573 caaaggtgggcgactaatctggctcatacgtagaggcatgtgcactggtcaagcgttgtt 32873632  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 29128026 - 29127961
Alignment:
Q  168 ctttcccatcggttttcgacc-atcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcg 232  Q
    ||||| ||||||||| ||||| | ||||||||||||||||||||||||| | |||| |||||||||    
T  29128026 ctttcgcatcggtttccgacccaccaaaggtgggcgactaatccggctcatgcgtagaggcatgcg 29127961  T

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Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 15320269 - 15320229
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgc 231  Q
    ||||||||||||||||||||||||||| |||| ||||||||    
T  15320269 caaaggtgggcgactaatccggctcgtgcgtagaggcatgc 15320229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 26361987 - 26362031
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgc 231  Q
    |||||||||||| |||||||||||||||||| |||| ||||||||    
T  26361987 ccatcaaaggtgtgcgactaatccggctcgtgcgtagaggcatgc 26362031  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 30767271 - 30767311
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgc 231  Q
    ||||||||||||||||||||||||||| |||| ||||||||    
T  30767271 caaaggtgggcgactaatccggctcgtgcgtagaggcatgc 30767311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 41630536 - 41630600
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccct 255  Q
    ||||||||||||||||||||||||| |  ||| ||||||||| | ||| ||||||||||| ||||    
T  41630536 caaaggtgggcgactaatccggctcatgtgtagaggcatgcgcactgggcaagcgttgttcccct 41630600  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 3507557 - 3507616
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    |||||||| |||||||||||||||||| |||| ||||||||| | ||| |||| ||||||    
T  3507557 caaaggtgagcgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgtt 3507616  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 7328950 - 7328868
Alignment:
Q  168 ctttcccatcggttttcgacc-atcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||| || |||||||||||| | ||||||||||||||||||||||||| | ||| |||||||||| | ||| |||| ||||||    
T  7328950 ctttcgcaccggttttcgacccaccaaaggtgggcgactaatccggctcatgcgt-aaggcatgcgcactggccaagtgttgtt 7328868  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 7650310 - 7650251
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||||||||||||||||| |||| || ||| |||| ||| |||| ||||||    
T  7650310 caaaggtgggcgactaatccggctcgtgcgtagagacattcgtactggccaagtgttgtt 7650251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 51682982 - 51683037
Alignment:
Q  195 ggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    |||||||||||||||||||||||  | | ||||||||| | |||||||||||||||    
T  51682982 ggtgggcgactaatccggctcgtgtggagaggcatgcgcactggtcaagcgttgtt 51683037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 52364820 - 52364883
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||| | ||| |||||| |||||| |||| ||||||||| | |||||||||||||||    
T  52364820 ccatcaaaggtagacgattaatccagctcgtgcgtagaggcatgcgcactggtcaagcgttgtt 52364883  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 2029287 - 2029352
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttc 252  Q
    ||||||| |||||||||||||||| |||| | |||| ||||||||||| |   |||||||||||||    
T  2029287 ccatcaatggtgggcgactaatccagctcatgcgtagaggcatgcgtactaaccaagcgttgtttc 2029352  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 23511674 - 23511593
Alignment:
Q  168 ctttcccatcggttttcgacc-atcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttg 248  Q
    ||||| || |||||||||||| ||||||||||| ||| ||||||| ||| | |||| ||||||||| | ||||||| |||||    
T  23511674 ctttcgcaccggttttcgacccatcaaaggtggacgattaatccgactcatgcgtagaggcatgcgcactggtcaaacgttg 23511593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 7310703 - 7310767
Alignment:
Q  168 ctttcccatcggttttcgacc-atcaaaggtgggcgactaatccggctcgtacgtaaaggcatgc 231  Q
    ||||| ||||||||| ||||| | ||||| || |||||||||||||||||| |||| ||||||||    
T  7310703 ctttcgcatcggtttccgacccaccaaagatgagcgactaatccggctcgtgcgtagaggcatgc 7310767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 10040639 - 10040575
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccct 255  Q
    ||||||||| |||| | |||||||||| |||| ||||||||| | ||| ||||||||||| ||||    
T  10040639 caaaggtggacgaccattccggctcgtgcgtagaggcatgcgcactggccaagcgttgttcccct 10040575  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 14254288 - 14254351
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||| ||||||||||||||| | |||||||||||||||| ||| |||||||||||    
T  14254288 ccatcaaaggtggacgactaatccggctcatgcgtaaaggcatgcgtactggccaagcgttgtt 14254351  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 250
Target Start/End: Complemental strand, 10336618 - 10336541
Alignment:
Q  174 catcggttttcga-ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||| ||||||||||||| ||| ||||||||||| | |||| ||||||||| | |||||||||||||||    
T  10336618 catcggttttcgatccatcaaaggtggacgattaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgtt 10336541  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 18649377 - 18649435
Alignment:
Q  192 aaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    |||||||||||| ||||| |||||||||||| ||||||||| | |||||||||||||||    
T  18649377 aaaggtgggcgattaatctggctcgtacgtagaggcatgcgcactggtcaagcgttgtt 18649435  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 43959846 - 43959904
Alignment:
Q  192 aaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    |||||||||||||||||||||||||| |||| ||||||||| | ||| |||||||||||    
T  43959846 aaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtt 43959904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 6899646 - 6899601
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcg 232  Q
    |||||||||||||||||||||||||||| || ||||||||||||||    
T  6899646 ccatcaaaggtgggcgactaatccggcttgtgcgtaaaggcatgcg 6899601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 32150922 - 32150987
Alignment:
Q  168 ctttcccatcggttttcgacc-atcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcg 232  Q
    ||||| ||||||||||||||| |||||||||| ||||||||| |||||| | ||||||||||||||    
T  32150922 ctttcgcatcggttttcgacccatcaaaggtgagcgactaattcggctcatgcgtaaaggcatgcg 32150987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 32142846 - 32142929
Alignment:
Q  168 ctttcccatcggttttcgacc-atcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||| ||||||||| ||||| |||||||||| ||||||||| |||||| | |||||||||||||| | ||| |||| ||||||    
T  32142846 ctttcgcatcggtttccgacccatcaaaggtgagcgactaattcggctcatgcgtaaaggcatgcgcactggccaagtgttgtt 32142929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 37339904 - 37339846
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgt 249  Q
    ||||||||||||||||||||||||||| |||  ||||||||| | ||| ||||||||||    
T  37339904 caaaggtgggcgactaatccggctcgtgcgttgaggcatgcgcactggccaagcgttgt 37339846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 33498859 - 33498920
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttg 248  Q
    ||||||||||||| ||||||||||||||| | |||| ||||||||| | ||| |||||||||    
T  33498859 ccatcaaaggtggacgactaatccggctcatgcgtagaggcatgcgcactggccaagcgttg 33498920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 9659203 - 9659267
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccct 255  Q
    ||||||||| ||||||||||||||| | |||||||||||||| | | ||||| ||||||| ||||    
T  9659203 caaaggtggacgactaatccggctcatgcgtaaaggcatgcgcactagtcaaacgttgttcccct 9659267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 5143154 - 5143236
Alignment:
Q  168 ctttcccatcggttttcga-ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||| || |||||||||| |||||||||||| |||||||||||| || || |||| ||||||||||| ||  |||||||||||    
T  5143154 ctttcacaccggttttcgatccatcaaaggtgagcgactaatccgtct-gtgcgtagaggcatgcgtactgaccaagcgttgtt 5143236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 16956550 - 16956491
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    |||||||| | |||||||||||||||| |||| ||||||||| | ||||||| |||||||    
T  16956550 caaaggtgagtgactaatccggctcgtgcgtagaggcatgcgcactggtcaaacgttgtt 16956491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 17642028 - 17642087
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||| ||||||||||||||||| |||| ||||||||| | ||| |||| ||||||    
T  17642028 caaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgtt 17642087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 254
Target Start/End: Original strand, 33004043 - 33004102
Alignment:
Q  195 ggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccc 254  Q
    |||||| |||||||||||||||| |||| ||||||||| | ||| ||||| |||||||||    
T  33004043 ggtgggtgactaatccggctcgtgcgtagaggcatgcgcactggccaagcattgtttccc 33004102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 46929738 - 46929821
Alignment:
Q  168 ctttcccatcggttttcga-ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||| ||||||||||||| |||||||| |||| ||||||||||||||| |  ||  ||||||||| | ||| |||||||||||    
T  46929738 ctttcgcatcggttttcgatccatcaaaagtggacgactaatccggctcatgtgtggaggcatgcgcattggccaagcgttgtt 46929821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 50371858 - 50371917
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||| |||||||||||||||||| || |||| | ||||||||| ||| |||||||||||    
T  50371858 caaagatgggcgactaatccggcttgtgcgtagaagcatgcgtactggccaagcgttgtt 50371917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 50503389 - 50503444
Alignment:
Q  195 ggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    |||||||||| |||||||||||| |||| ||||||||| | |||||||| ||||||    
T  50503389 ggtgggcgacaaatccggctcgtgcgtagaggcatgcgcactggtcaagtgttgtt 50503444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 33418139 - 33418197
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgt 249  Q
    ||||||||| ||||||||||||||||| | || ||||||||| | ||| ||||||||||    
T  33418139 caaaggtggacgactaatccggctcgtgcatagaggcatgcgcactggccaagcgttgt 33418197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 250
Target Start/End: Complemental strand, 18808335 - 18808290
Alignment:
Q  205 taatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||| ||| |||||||||||| | |||||||||||||||    
T  18808335 taatccggctcatacataaaggcatgcgcactggtcaagcgttgtt 18808290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 251
Target Start/End: Complemental strand, 5504119 - 5504055
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgttt 251  Q
    ||||||||||||| ||||||||||||||| | |||| ||||||| | | |  |||||||||||||    
T  5504119 ccatcaaaggtggacgactaatccggctcatgcgtagaggcatgtgcactaatcaagcgttgttt 5504055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 12150812 - 12150760
Alignment:
Q  201 cgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttcc 253  Q
    ||||||||||||||||| |||| |||||||| || |||  |||||||||||||    
T  12150812 cgactaatccggctcgtgcgtagaggcatgcatattggctaagcgttgtttcc 12150760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 34697423 - 34697379
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgc 231  Q
    |||||||| |||||||||||||||||||| | |||| ||||||||    
T  34697423 ccatcaaaagtgggcgactaatccggctcatgcgtagaggcatgc 34697379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 34719860 - 34719804
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgtt 247  Q
    |||||||| |||||||||| | ||||| |||| ||||||||| | ||||||||||||    
T  34719860 caaaggtgagcgactaatctgactcgtgcgtagaggcatgcgcactggtcaagcgtt 34719804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 12663 - 12600
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||||||||||||||| ||| | |||| ||||||||| | |||||||||||||||    
T  12663 ccatcaaaggtgggcgactaatccgactcatgcgtagaggcatgcgcactggtcaagcgttgtt 12600  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 583903 - 583840
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||||||||||||||| ||| | |||| ||||||||| | |||||||||||||||    
T  583903 ccatcaaaggtgggcgactaatccgactcatgcgtagaggcatgcgcactggtcaagcgttgtt 583840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 16894046 - 16893968
Alignment:
Q  168 ctttcccatcggttttcgaccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgtt 247  Q
    ||||| || |||||| |||||| |||||||||||||| |||||||||| | |||||||||||| ||| ||| ||||||||    
T  16894046 ctttcgcaccggtttccgaccaccaaaggtgggcgac-aatccggctcatgcgtaaaggcatgtgtactggccaagcgtt 16893968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 43032988 - 43032929
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    |||||||||||||||||||||||||||  ||| ||||||||| | ||| |||||||||||    
T  43032988 caaaggtgggcgactaatccggctcgtgtgtagaggcatgcgcactggccaagcgttgtt 43032929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 250
Target Start/End: Complemental strand, 18374112 - 18374038
Alignment:
Q  177 cggttttcgacc-atcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    |||||||||||| | ||||| ||| ||||||||||||||| | |||| ||||||||| | |||||||||||||||    
T  18374112 cggttttcgacccaccaaagttggacgactaatccggctcatgcgtagaggcatgcgcactggtcaagcgttgtt 18374038  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 35496274 - 35496340
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttcc 253  Q
    ||||||||||||||||| |||||| ||||||||||| ||||||||| | ||  |||| |||||||||    
T  35496274 ccatcaaaggtgggcgattaatccagctcgtacgtagaggcatgcgcactgaccaagtgttgtttcc 35496340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 15884579 - 15884620
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcg 232  Q
    ||||||||||||||||||||||||||| |||| |||||||||    
T  15884579 caaaggtgggcgactaatccggctcgtgcgtagaggcatgcg 15884620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 22212514 - 22212598
Alignment:
Q  168 ctttcccatcggttttcga-ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtc-aagcgttgtt 250  Q
    ||||| || |||||||||| ||| |||||||| |||||||||||||| ||| |||| | ||||||||| ||||| ||||||||||    
T  22212514 ctttcgcaccggttttcgaaccaccaaaggtgagcgactaatccggcccgtgcgtagaagcatgcgtactggtcaaagcgttgtt 22212598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 45521259 - 45521191
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccct 255  Q
    |||||||||||| |||||||||||||||| | |||| ||||||||| | || ||||| |||||| ||||    
T  45521259 ccatcaaaggtgagcgactaatccggctcatgcgtagaggcatgcgcactgatcaagtgttgttcccct 45521191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 2964163 - 2964104
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    |||||||||||||||||||||| |||| |||| ||||||||  | ||| |||||||||||    
T  2964163 caaaggtgggcgactaatccggttcgtgcgtagaggcatgcacattggccaagcgttgtt 2964104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 43027416 - 43027333
Alignment:
Q  168 ctttcccatcggttttcgacc-atcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||| ||||||||| ||||| ||||||| ||| ||||||||||||||| | |||| ||||||||| | ||| ||| |||||||    
T  43027416 ctttcgcatcggtttccgacccatcaaagatggacgactaatccggctcatgcgtagaggcatgcgcattggacaatcgttgtt 43027333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 18091485 - 18091427
Alignment:
Q  193 aaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgttt 251  Q
    |||||||||||||||| || ||||| |||| ||||||||| | ||||||| ||||||||    
T  18091485 aaggtgggcgactaattcgcctcgtgcgtagaggcatgcgcactggtcaaacgttgttt 18091427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 4479319 - 4479383
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccct 255  Q
    ||||||||| |||||||||| |||| | |||| ||||||||| | ||| ||||||||||| ||||    
T  4479319 caaaggtggacgactaatccagctcatgcgtagaggcatgcgcactggccaagcgttgttcccct 4479383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 6042904 - 6042844
Alignment:
Q  195 ggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccct 255  Q
    ||||||||||||||||||||| | |||  ||||||||| | ||| ||||||||||| ||||    
T  6042904 ggtgggcgactaatccggctcatgcgtttaggcatgcgcactggccaagcgttgttcccct 6042844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 26571035 - 26570987
Alignment:
Q  168 ctttcccatcggttttcgac-catcaaaggtgggcgactaatccggctc 215  Q
    ||||| ||||||||| |||| |||||||||||| |||||||||||||||    
T  26571035 ctttcacatcggtttccgactcatcaaaggtggacgactaatccggctc 26570987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 9633648 - 9633707
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||||||||||||||||| |||| ||||||||| | ||| |||||||||||    
T  9633648 caaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtt 9633707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 12606517 - 12606458
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||||||||||||||||| |||| ||||||||| | ||| ||| |||||||    
T  12606517 caaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaaacgttgtt 12606458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 2271322 - 2271385
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||| ||||||||||||||||| |||| || |||||| | |||  ||||||||||    
T  2271322 ccatcaaaggtggacgactaatccggctcgtgcgtagagacatgcgcactggctaagcgttgtt 2271385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 3601171 - 3601112
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||| |||||||||||||||||  ||| ||||||||| | ||| |||||||||||    
T  3601171 caaaggtggacgactaatccggctcgtgtgtataggcatgcgcactggccaagcgttgtt 3601112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 30788876 - 30788935
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||||||||||||||||| | || ||||||||| | ||| ||| |||||||    
T  30788876 caaaggtgggcgactaatccggctcgtgcctagaggcatgcgcactggccaaacgttgtt 30788935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 8888983 - 8888905
Alignment:
Q  178 ggttttcga-ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccct 255  Q
    ||||||||| ||||||||||||| ||||||||||| ||| | |||| ||| ||||| | ||| ||| ||||||||||||    
T  8888983 ggttttcgatccatcaaaggtggacgactaatccgactcatgcgtagaggtatgcgcactggccaaacgttgtttccct 8888905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 12635896 - 12635838
Alignment:
Q  196 gtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccc 254  Q
    ||||||||||||||||||| || |||| ||||||||| | | | |||||||||||||||    
T  12635896 gtgggcgactaatccggcttgtgcgtagaggcatgcgcactagccaagcgttgtttccc 12635838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 14107387 - 14107440
Alignment:
Q  197 tgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||||||||| | |||| ||||||| | | |||||||||||||||    
T  14107387 tgggcgactaatccggctcatgcgtagaggcatgtgcactggtcaagcgttgtt 14107440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 17114918 - 17114979
Alignment:
Q  189 atcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||||||||||||||||| | |||| |||||||   | ||| |||||||||||    
T  17114918 atcaaaggtgggcgactaatccggctcatgcgtagaggcatgtccattggccaagcgttgtt 17114979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 13391388 - 13391332
Alignment:
Q  177 cggttttcgacc-atcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcg 232  Q
    |||||||||||| || |||  ||||||||||||||||||||| |||| |||||||||    
T  13391388 cggttttcgacccattaaatatgggcgactaatccggctcgtgcgtagaggcatgcg 13391332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 16035044 - 16034961
Alignment:
Q  168 ctttcccatcggttttcgac-catcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||| || |||||| |||| |||||| |||| ||||||||||||||||||||||| ||||||||  | |||||||||||||||    
T  16035044 ctttcgcaccggtttccgactcatcaatggtgagcgactaatccggctcgtacgtataggcatgcacactggtcaagcgttgtt 16034961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 10823142 - 10823084
Alignment:
Q  192 aaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    |||||||||||||||||||||||||| |||| ||||||||| | ||| |||||||||||    
T  10823142 aaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtt 10823084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 7787154 - 7787087
Alignment:
Q  177 cggttttcga-ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaag 243  Q
    |||||||||| ||| ||||| ||||||||||||||||||||| |||| ||||||||||| ||| ||||    
T  7787154 cggttttcgatccaccaaagatgggcgactaatccggctcgtgcgtagaggcatgcgtactggccaag 7787087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 254
Target Start/End: Original strand, 18846220 - 18846307
Alignment:
Q  168 ctttcccatcggttttcga-ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccc 254  Q
    ||||| || |||||||||| ||||||| | || |||| ||||| |||||||||||||||||||||| | ||  |||||||||||||||    
T  18846220 ctttcgcaccggttttcgatccatcaatgatgagcgattaatctggctcgtacgtaaaggcatgcgcactgcccaagcgttgtttccc 18846307  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 252
Target Start/End: Original strand, 20963115 - 20963194
Alignment:
Q  174 catcggttttcgacc-atcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttc 252  Q
    ||||||||||||||| ||||||||||||||||||||| | ||| |||||| |||||||   | |||||||| ||||||||    
T  20963115 catcggttttcgacccatcaaaggtgggcgactaatctgcctcatacgtagaggcatgtacattggtcaagtgttgtttc 20963194  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 25540427 - 25540486
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||| ||||||||||||||||| |||| ||||||||| | ||| |||||||||||    
T  25540427 caaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtt 25540486  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 253
Target Start/End: Original strand, 9360772 - 9360833
Alignment:
Q  192 aaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttcc 253  Q
    ||||||||||||||||| |||||||| |||| ||||||||| | ||| ||| ||||||||||    
T  9360772 aaaggtgggcgactaattcggctcgtgcgtagaggcatgcgcactggccaaacgttgtttcc 9360833  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 256
Target Start/End: Complemental strand, 35946817 - 35946756
Alignment:
Q  195 ggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttcccta 256  Q
    ||||| ||||||||||||||||| |||| ||||||||  ||||| ||||||||||| |||||    
T  35946817 ggtggacgactaatccggctcgtgcgtagaggcatgcacaatggccaagcgttgttccccta 35946756  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 37560280 - 37560215
Alignment:
Q  168 ctttcccatcggttttcgacc-atcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcg 232  Q
    ||||| || |||||||||||| ||||||||||| ||| ||||||||||||| |||| |||||||||    
T  37560280 ctttcacaccggttttcgacccatcaaaggtggacgattaatccggctcgtgcgtagaggcatgcg 37560215  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 42770656 - 42770733
Alignment:
Q  174 catcggttttcgacc-atcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||||| | ||||||||| ||| ||||||||||||| || | ||||||||| | ||| |||||||||||    
T  42770656 catcggttttcgacccaccaaaggtggacgattaatccggctcgtgcgaagaggcatgcgcactggccaagcgttgtt 42770733  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 16813188 - 16813252
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccct 255  Q
    ||||| ||| ||||||||||||||||| | || ||||||||||| ||||||| ||||||| ||||    
T  16813188 caaagatggacgactaatccggctcgtgcatagaggcatgcgtactggtcaaacgttgttcccct 16813252  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 16852467 - 16852531
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccct 255  Q
    ||||| ||| ||||||||||||||||| | || ||||||||||| ||||||| ||||||| ||||    
T  16852467 caaagatggacgactaatccggctcgtgcatagaggcatgcgtactggtcaaacgttgttcccct 16852531  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 29422302 - 29422258
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgc 231  Q
    ||||||||||||| ||||||||||||||||| |||||||| ||||    
T  29422302 ccatcaaaggtggacgactaatccggctcgtgcgtaaaggtatgc 29422258  T

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Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 38005485 - 38005421
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccct 255  Q
    ||||||||||||||||||||||||| |  ||| ||||||||| | ||| ||||||||||| ||||    
T  38005485 caaaggtgggcgactaatccggctcatgtgtagaggcatgcgcactggccaagcgttgttcccct 38005421  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 44945675 - 44945635
Alignment:
Q  192 aaaggtgggcgactaatccggctcgtacgtaaaggcatgcg 232  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  44945675 aaaggtgggcgactaatccggctcgtgcgtagaggcatgcg 44945635  T

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Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 8410214 - 8410155
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    |||| |||||||||||||||||||||| |||| ||||||||| | ||| |||| ||||||    
T  8410214 caaaagtgggcgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgtt 8410155  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 12455389 - 12455330
Alignment:
Q  195 ggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccc 254  Q
    |||| |||||||||||||||||| |||| ||||||||| | |||  ||||||||||||||    
T  12455389 ggtgagcgactaatccggctcgtgcgtagaggcatgcgcactggctaagcgttgtttccc 12455330  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 18902553 - 18902612
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||||||||| ||||||| |||| || || ||| | |||||||||||||||    
T  18902553 caaaggtgggcgactaatctggctcgtgcgtagagacacgcgcactggtcaagcgttgtt 18902612  T

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Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 28525474 - 28525541
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccc 254  Q
    |||| ||||||||  |||||||||||||||| |||| ||||||||| | ||| |||| ||||||||||    
T  28525474 ccattaaaggtggatgactaatccggctcgtgcgtagaggcatgcgcactggccaagtgttgtttccc 28525541  T

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Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 34722767 - 34722704
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||||||||||||||||||||| |||| || |||| | | ||  |||||||||||    
T  34722767 ccatcaaaggtgggcgactaatccggctcgtgcgtagagacatgtgcactgaccaagcgttgtt 34722704  T

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Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 44139563 - 44139508
Alignment:
Q  195 ggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||||||||||||| |||| ||||| ||| | ||| |||||||||||    
T  44139563 ggtgggcgactaatccggctcgtgcgtagaggcacgcgcactggccaagcgttgtt 44139508  T

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Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 252
Target Start/End: Complemental strand, 21286516 - 21286466
Alignment:
Q  202 gactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttc 252  Q
    ||||||||| |||||| |||| ||||||||| | |||||||||||||||||    
T  21286516 gactaatccagctcgtgcgtagaggcatgcgcactggtcaagcgttgtttc 21286466  T

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Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 43303321 - 43303379
Alignment:
Q  197 tgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccct 255  Q
    ||||||| |||||| |||||| | || ||||||||||| ||||||||||||||| ||||    
T  43303321 tgggcgattaatccagctcgtgcatagaggcatgcgtactggtcaagcgttgttcccct 43303379  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 26805397 - 26805340
Alignment:
Q  174 catcggttttcga-ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatg 230  Q
    ||||||||||||| ||| ||||||||||||||||||||| ||| | |||| |||||||    
T  26805397 catcggttttcgagccaccaaaggtgggcgactaatccgactcatgcgtagaggcatg 26805340  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 10046500 - 10046563
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccct 255  Q
    ||||||||| ||||||||||||||| | |||| ||||||||| | | ||||| ||||||||||||    
T  10046500 caaaggtggtcgactaatccggctcatgcgtagaggcatgcgcact-gtcaaacgttgtttccct 10046563  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 231
Target Start/End: Original strand, 41031929 - 41031969
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgc 231  Q
    |||||||||| |||||||||||||||| |||| ||||||||    
T  41031929 caaaggtgggtgactaatccggctcgtgcgtagaggcatgc 41031969  T

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Target: scaffold0004 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 95008 - 95066
Alignment:
Q  195 ggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttcc 253  Q
    ||||||||||||||||||||| | |||||||||||||| | ||||||| ||||||||||    
T  95008 ggtgggcgactaatccggctcatgcgtaaaggcatgcgcactggtcaaacgttgtttcc 95066  T

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Target: scaffold0006 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 68615 - 68559
Alignment:
Q  177 cggttttcgacc-atcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcg 232  Q
    |||||||||||| | ||||||||||||||||||||||||||| |||| |||||||||    
T  68615 cggttttcgacccaccaaaggtgggcgactaatccggctcgtgcgtagaggcatgcg 68559  T

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Target: scaffold0376 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 12760 - 12697
Alignment:
Q  187 ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    |||||||||||||||||||||||||| |||| |||| ||||||||  | ||| |||||||||||    
T  12760 ccatcaaaggtgggcgactaatccggttcgtgcgtagaggcatgcacactggccaagcgttgtt 12697  T

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Target: scaffold0170 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 9931 - 9872
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||| ||||||||||||||||| |||| ||||||||| | ||| |||||||||||    
T  9931 caaaggtggacgactaatccggctcgtgcgtagaggcatgcgcactggccaagcgttgtt 9872  T

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Target: scaffold0010 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 155734 - 155793
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtt 250  Q
    ||||||||||||||||||||||||||| |||| ||||||||| | | | |||||||||||    
T  155734 caaaggtgggcgactaatccggctcgtgcgtagaggcatgcgcactagccaagcgttgtt 155793  T

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Target: scaffold0116 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 17494 - 17413
Alignment:
Q  174 catcggttttcgacc-atcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcgtaatggtcaagcgttgtttccc 254  Q
    ||||||||| ||||| ||||| |||||||||||||||||||||||  ||| | ||||||| | ||||||||| || ||||||    
T  17494 catcggtttccgacccatcaatggtgggcgactaatccggctcgtgtgtagaagcatgcgcactggtcaagcattttttccc 17413  T

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Target: scaffold0029 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 41130 - 41090
Alignment:
Q  191 caaaggtgggcgactaatccggctcgtacgtaaaggcatgc 231  Q
    ||||| ||||||||||||||||||||| |||| ||||||||    
T  41130 caaagatgggcgactaatccggctcgtgcgtagaggcatgc 41090  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 219470 - 219414
Alignment:
Q  177 cggttttcga-ccatcaaaggtgggcgactaatccggctcgtacgtaaaggcatgcg 232  Q
    |||||||||| ||||||||||||| |||||||||| | |||| |||| |||||||||    
T  219470 cggttttcgatccatcaaaggtggacgactaatccagttcgtgcgtagaggcatgcg 219414  T

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