View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11622_low_4 (Length: 726)
Name: NF11622_low_4
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_low_4 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 690; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 690; E-Value: 0
Query Start/End: Original strand, 20 - 721
Target Start/End: Original strand, 38883482 - 38884183
Alignment:
| Q |
20 |
tatgattgctttgaaaatttgatgtagttgtagcgtgttttgtactgaatttcaaattgttactgcttgaattaaattggaatggttcaaatgatggttt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38883482 |
tatgattgctttgaaaatttgatgtagttgtagcgtgttttgtactgaatttcaaattgttactgcttgaattaaattggaatggttcaaatgatggttt |
38883581 |
T |
|
| Q |
120 |
tattaatattattctgtttttaacctcttcatacttccaggggatacaatgatatgtctattggttgatttcattagttaacatcctcaatttgttccgt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
38883582 |
tattaatattattctgtttttaacctcttcatacttccaggggatacaatgatatgtctattggttgatttcattagttaacatcctcaatttgttctgt |
38883681 |
T |
|
| Q |
220 |
gacgataaaattcgcgataattctaaataaaatattccatattttgtcaaatctgactcttggtttcacttatgcaggaatttggttcttttggcttgaa |
319 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38883682 |
gacgattaaattcgcgataattctaaataaaatattccatattttgtcaaatctgactcttggtttcacttatgcaggaatttggttcttttggcttgaa |
38883781 |
T |
|
| Q |
320 |
tagtcatggctaaggatcaaattcaggtgctaaatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatgggatt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38883782 |
tagtcatggctaaggatcaaattcaggtgctaaatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatgggatt |
38883881 |
T |
|
| Q |
420 |
ctttacagatgcctatgatctgttctgtgtatcccttgttacaaagttgctcggtcgcatatactaccacgttgatggtgctgcgaagcccggtacattg |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38883882 |
ctttacagatgcctatgatctgttctgtgtatcccttgttacaaagttgctcggtcgcatatactaccacgttgatggtgctgcgaagcccggtacattg |
38883981 |
T |
|
| Q |
520 |
cctcccaatgtatcagctgctgtgaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcaggaaaa |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38883982 |
cctcccaatgtatcagctgctgtgaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcaggaaaa |
38884081 |
T |
|
| Q |
620 |
aagtctatggtatgaccctcatgatgatggtcatctgttcaattggttctggtctttctttcggacacactccaaagtctgtcatgacaaccctttgctt |
719 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38884082 |
aagtctatggtatgaccctcatgatgatggttatctgttcaattggttctggtctttctttcggacacactccaaagtctgtcatgacaaccctttgctt |
38884181 |
T |
|
| Q |
720 |
ct |
721 |
Q |
| |
|
|| |
|
|
| T |
38884182 |
ct |
38884183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 315 - 721
Target Start/End: Original strand, 38892969 - 38893375
Alignment:
| Q |
315 |
ttgaatagtcatggctaaggatcaaattcaggtgctaaatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatg |
414 |
Q |
| |
|
||||| ||| ||||| ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| || ||||| ||||||||||| ||||| ||| |
|
|
| T |
38892969 |
ttgaaaagtaatggcaaaggagcaaattcaggtgctaaatgcacttgatgtggcgaaaacgcaatggtatcacttcacagcaatcatcattgctggaatg |
38893068 |
T |
|
| Q |
415 |
ggattctttacagatgcctatgatctgttctgtgtatcccttgttacaaagttgctcggtcgcatatactaccacgttgatggtgctgcgaagcccggta |
514 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||| |||||||| || |||||||| ||||| ||||||||||| | ||||||||||| |
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|
| T |
38893069 |
ggattctttactgatgcctatgatctgttctgcatatcccttgttaccaagttgctgggacgcatatattaccatgttgatggtgccgggaagcccggta |
38893168 |
T |
|
| Q |
515 |
cattgcctcccaatgtatcagctgctgtgaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcag |
614 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||| || ||||||||||| |||||| ||||||| ||||||||||||||||||||||||||| |||| || |
|
|
| T |
38893169 |
cattgccacccaatgtatcagctgcggttaatggggttgctttctgtggtacacttacagggcagcttttctttggctggcttggtgataagttgggtag |
38893268 |
T |
|
| Q |
615 |
gaaaaaagtctatggtatgaccctcatgatgatggtcatctgttcaattggttctggtctttctttcggacacactccaaagtctgtcatgacaaccctt |
714 |
Q |
| |
|
||| ||||| ||||||||||| || ||||| ||||| ||||| || |||||||| || |||||||| ||||||| |||||| | |||||| |||| ||| |
|
|
| T |
38893269 |
gaagaaagtgtatggtatgacactgatgataatggtaatctgctccattggttccggcctttcttttggacacaatccaaaaacggtcatggcaactctt |
38893368 |
T |
|
| Q |
715 |
tgcttct |
721 |
Q |
| |
|
||||||| |
|
|
| T |
38893369 |
tgcttct |
38893375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 6e-33; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 343 - 635
Target Start/End: Complemental strand, 30621081 - 30620789
Alignment:
| Q |
343 |
caggtgctaaatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatgggattctttacagatgcctatgatctgt |
442 |
Q |
| |
|
|||||||||||||| || ||||| || ||||||||||||||||||||||| ||||| |||||||||| ||||| ||||| || ||||| || ||||| | |
|
|
| T |
30621081 |
caggtgctaaatgcactagatgtagcgaaaacacaatggtaccatttcacagcaattgtcatagctggaatgggcttcttcaccgatgcatacgatctat |
30620982 |
T |
|
| Q |
443 |
tctgtgtatcccttgttacaaagttgctcggtcgcatatactaccacgttgatggtgctgcgaagcccggtacattgcctcccaatgtatcagctgctgt |
542 |
Q |
| |
|
|||| |||||||||| |||||| | ||||||||||| |||||||| || ||||| |||| ||||| || | ||||| || || || |||| || || |
|
|
| T |
30620981 |
tctgcatatcccttgtcacaaagctactcggtcgcatttactaccatgtcgatggagctgaaaagccaggatcgttgccaccaaacgttgcagcagcagt |
30620882 |
T |
|
| Q |
543 |
gaatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcaggaaaaaagtctatggtatgac |
635 |
Q |
| |
|
||||| || ||||| ||| |||||||| || ||||| ||||| |||||||| ||||| || | ||| | |||||||||||||| ||||| |
|
|
| T |
30620881 |
taatggcgttgcttttgttgggacactttctggacaactcttcttcggctggctcggtgacaaactaggccgtaaaaaagtctatggcatgac |
30620789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 349 - 468
Target Start/End: Complemental strand, 16175559 - 16175440
Alignment:
| Q |
349 |
ctaaatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatgggattctttacagatgcctatgatctgttctgtg |
448 |
Q |
| |
|
|||||||| || |||||||| || ||||||| ||||||||||||| |||| | |||||||| ||||| ||||| || ||||| |||||||| ||||| |
|
|
| T |
16175559 |
ctaaatgcactagatgtggcaaagacacaattgtaccatttcactacaattgtgatagctggaatgggtttcttcactgatgcttatgatcttttctgca |
16175460 |
T |
|
| Q |
449 |
tatcccttgttacaaagttg |
468 |
Q |
| |
|
| || ||||||||||||||| |
|
|
| T |
16175459 |
tttctcttgttacaaagttg |
16175440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 346 - 468
Target Start/End: Original strand, 16223190 - 16223312
Alignment:
| Q |
346 |
gtgctaaatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatgggattctttacagatgcctatgatctgttct |
445 |
Q |
| |
|
||||||||||| ||||||||||| || ||||||| ||| || |||||| |||| | || ||||| ||||||||||| || ||||| |||||||| |||| |
|
|
| T |
16223190 |
gtgctaaatgcacttgatgtggccaagacacaattgtatcacttcactacaattgtgattgctggaatgggattcttcactgatgcatatgatcttttct |
16223289 |
T |
|
| Q |
446 |
gtgtatcccttgttacaaagttg |
468 |
Q |
| |
|
| | |||||||| ||||||||| |
|
|
| T |
16223290 |
gcatttcccttgtcacaaagttg |
16223312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 544 - 680
Target Start/End: Original strand, 33115133 - 33115269
Alignment:
| Q |
544 |
aatggtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcaggaaaaaagtctatggtatgaccctcatga |
643 |
Q |
| |
|
|||||||| |||||| ||||| |||| |||| |||||||||||||| ||||||||||| || ||||| || ||| ||| ||||| |||||||| ||| |
|
|
| T |
33115133 |
aatggtgttgctttcagtggagcactggcaggacaacttttctttggttggcttggtgacaaaatgggaagaaaacgagtttatggaatgacccttatgc |
33115232 |
T |
|
| Q |
644 |
tgatggtcatctgttcaattggttctggtctttcttt |
680 |
Q |
| |
|
| |||||||| |||| ||| ||||||||| ||||| |
|
|
| T |
33115233 |
ttatggtcatagcttcacttgcttctggtctctcttt |
33115269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 346 - 468
Target Start/End: Original strand, 16183800 - 16183922
Alignment:
| Q |
346 |
gtgctaaatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatgggattctttacagatgcctatgatctgttct |
445 |
Q |
| |
|
||||| ||||| || ||||| || || || |||| ||||||||||||| |||| | |||||||| ||||||||||| || ||||| |||||||| |||| |
|
|
| T |
16183800 |
gtgcttaatgcactcgatgtcgcaaagacgcaattgtaccatttcactacaattgtgatagctggaatgggattcttcactgatgcatatgatcttttct |
16183899 |
T |
|
| Q |
446 |
gtgtatcccttgttacaaagttg |
468 |
Q |
| |
|
| | |||||||| ||||||||| |
|
|
| T |
16183900 |
gcatttcccttgtcacaaagttg |
16183922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 344 - 470
Target Start/End: Original strand, 33114936 - 33115062
Alignment:
| Q |
344 |
aggtgctaaatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatgggattctttacagatgcctatgatctgtt |
443 |
Q |
| |
|
||||||| ||||| |||||||| || || ||||| ||||| ||||| |||||||| |||| ||||| ||||| || || || ||| |||||||||| || |
|
|
| T |
33114936 |
aggtgcttaatgcacttgatgtagccaagacacagtggtatcattttactgcaattgtcattgctggaatgggttttttcactgattcctatgatctctt |
33115035 |
T |
|
| Q |
444 |
ctgtgtatcccttgttacaaagttgct |
470 |
Q |
| |
|
||| | ||||||||||| || ||||| |
|
|
| T |
33115036 |
ctgcatttcccttgttaccaaattgct |
33115062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 373 - 446
Target Start/End: Complemental strand, 9700111 - 9700038
Alignment:
| Q |
373 |
acacaatggtaccatttcactgcaatcatcatagctggtatgggattctttacagatgcctatgatctgttctg |
446 |
Q |
| |
|
||||||||||||||| | || || || | || ||||| ||||||||||| || |||||||||||||||||||| |
|
|
| T |
9700111 |
acacaatggtaccatgtaacagctatagtaattgctggcatgggattcttcactgatgcctatgatctgttctg |
9700038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 349 - 630
Target Start/End: Complemental strand, 37316274 - 37315993
Alignment:
| Q |
349 |
ctaaatgcgcttgatgtggctaaaacacaatggtaccatttcactgcaatcatcatagctggtatgggattctttacagatgcctatgatctgttctgtg |
448 |
Q |
| |
|
|||| ||| ||||||| || ||||||||||||||||||||||| || ||||| || ||||||||||||||||| |||||||| ||||| || ||||| |
|
|
| T |
37316274 |
ctaactgcccttgatgcagccaaaacacaatggtaccatttcacagccatcataattgctggtatgggattcttcacagatgcatatgaccttttctgca |
37316175 |
T |
|
| Q |
449 |
tatcccttgttacaaagttgctcggtcgcatatactac-cacgttgatggtgctgcgaagcccggtacattgcctcccaatgtatcagctgctgtgaatg |
547 |
Q |
| |
|
|| | |||||| ||||| || || | ||||| ||| ||| | ||||| ||||| || || |||||||| ||||||||||| || || |||| |
|
|
| T |
37316174 |
taccaaatgttaccaagttacttggaagaatatattacacacaccca-ggtgcactcaagcctggaactttgcctccaaatgtatcagcagcagtaaatg |
37316076 |
T |
|
| Q |
548 |
gtgtagctttctgtggaacactttcagggcaacttttctttggctggcttggtgataagatgggcaggaaaaaagtctatggt |
630 |
Q |
| |
|
|||| ||| ||||||| || || |||| |||||||||||||| |||||||| || || ||||| || |||||||| |||||| |
|
|
| T |
37316075 |
gtgttgctctctgtggcactctagcaggccaacttttctttggttggcttggggacaaaatgggaagaaaaaaagtttatggt |
37315993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 370 - 446
Target Start/End: Original strand, 19207037 - 19207113
Alignment:
| Q |
370 |
aaaacacaatggtaccatttcactgcaatcatcatagctggtatgggattctttacagatgcctatgatctgttctg |
446 |
Q |
| |
|
|||||||||||||||| |||||| || ||||| || |||||||||||||||| |||||||| ||||| || ||||| |
|
|
| T |
19207037 |
aaaacacaatggtaccttttcacagccatcataattgctggtatgggattctgcacagatgcatatgaccttttctg |
19207113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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