View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11622_low_46 (Length: 241)
Name: NF11622_low_46
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_low_46 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 29435049 - 29434825
Alignment:
| Q |
17 |
acaaccatcatgatactctcgatcactgagaggcatccatagacgttaagagtgaaaaacacatagtgaatgaatcctggcctgaatttcaccatgctat |
116 |
Q |
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| T |
29435049 |
acaaccatcatgatactctcgatcactgagaggcatccatagacgttaagagtgaaaaacacatagtgaatgaatcctggcctgaatttcaccatgttat |
29434950 |
T |
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| Q |
117 |
atgtgattgtgcaagaagtaagagcaataacaaccaggaatgggaatgatgaaataaagtttgctaaaatataggctgctactccgtagtatccattcat |
216 |
Q |
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| T |
29434949 |
atgtgattgtgcaagaagtaagagcaataacaaccaggaatgggaatgatgaaataaagtttgctaaaatataggctgctactccgtagtatccattcat |
29434850 |
T |
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| Q |
217 |
cctttctctataaaatacctgtttc |
241 |
Q |
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| T |
29434849 |
cctttctctataaaatacctgtttc |
29434825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 29468272 - 29468048
Alignment:
| Q |
17 |
acaaccatcatgatactctcgatcactgagaggcatccatagacgttaagagtgaaaaacacatagtgaatgaatcctggcctgaatttcaccatgctat |
116 |
Q |
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||||||||||||| |||||| |||||||||| |||||| |||| ||||| |||||||||| |||||||||||||||| || ||||||||||||||| ||| |
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| T |
29468272 |
acaaccatcatgagactctcaatcactgagatgcatccgtagatgttaatagtgaaaaacgcatagtgaatgaatccgggtctgaatttcaccatgttat |
29468173 |
T |
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| Q |
117 |
atgtgattgtgcaagaagtaagagcaataacaaccaggaatgggaatgatgaaataaagtttgctaaaatataggctgctactccgtagtatccattcat |
216 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||||||| | |||||||| || || ||||||||||| |
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| T |
29468172 |
atgtgattgtgcaagaagtaagagcaatagcaaccaagaatgggaatgatgaaagaaagtttgataaaataaatgctgctacaccataatatccattcat |
29468073 |
T |
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| Q |
217 |
cctttctctataaaatacctgtttc |
241 |
Q |
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||||||||||||||||||||||||| |
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| T |
29468072 |
cctttctctataaaatacctgtttc |
29468048 |
T |
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