View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11622_low_47 (Length: 237)
Name: NF11622_low_47
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_low_47 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 30350202 - 30349979
Alignment:
| Q |
14 |
cacttaacatgaggcaagaaccttagcaactttcctacatcattcttaatatattttctctccctctctcactctcttttatttcaacacttagactcaa |
113 |
Q |
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| T |
30350202 |
cacttaacatgaggcaagaaccttagcaactttcctacatcattcttaatatattttctctccctctctcactctcttttatttcaacacttagactcaa |
30350103 |
T |
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| Q |
114 |
tcaagtccttgctactcaagagaatggcttctccaactcaaaatttgaggattcaaaaggctacaatagtgttactcattatatgtatttcattttcttc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30350102 |
tcaagtccttgctactcaagagaatggcttctccaactcaaaatttgaggattcaaaaggctacaatagtgttactcattatatgtatttcattttcttc |
30350003 |
T |
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| Q |
214 |
ttcaaccgaagaaatcacaataac |
237 |
Q |
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||||||||||||||||| |||||| |
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| T |
30350002 |
ttcaaccgaagaaatcataataac |
30349979 |
T |
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