View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11622_low_52 (Length: 224)
Name: NF11622_low_52
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_low_52 |
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| [»] chr4 (6 HSPs) |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 4e-74; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 11696225 - 11696020
Alignment:
| Q |
19 |
aatatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcagcagttccag |
118 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || || ||||| |||| ||||||||||| |
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| T |
11696225 |
aatatatagatgagagaagcaagcatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccag |
11696126 |
T |
|
| Q |
119 |
cccaaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgatgccct |
218 |
Q |
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|||||||||| ||||| | ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11696125 |
cccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgatgccct |
11696026 |
T |
|
| Q |
219 |
ctctgc |
224 |
Q |
| |
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|||||| |
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| T |
11696025 |
ctctgc |
11696020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 11702019 - 11701817
Alignment:
| Q |
22 |
atatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcagcagttccagccc |
121 |
Q |
| |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||| |||| ||| |||||||||| |
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| T |
11702019 |
atatagataagagaagcaagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcacctaagagaggaagtagagaagctgttccagccc |
11701920 |
T |
|
| Q |
122 |
aaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgatgccctctc |
221 |
Q |
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||| ||| |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11701919 |
aaacatttacattcttagcagctgttgcagtgctctgtttgagtggccctgttagatatgatatcaaattcccttgaattccataatatgataccctctc |
11701820 |
T |
|
| Q |
222 |
tgc |
224 |
Q |
| |
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||| |
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| T |
11701819 |
tgc |
11701817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 11798063 - 11797861
Alignment:
| Q |
22 |
atatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcagcagttccagccc |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||| |||| |||||||||| ||| |
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| T |
11798063 |
atatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccaaccc |
11797964 |
T |
|
| Q |
122 |
aaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgatgccctctc |
221 |
Q |
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||| ||| ||||| | ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
11797963 |
aaacattcacattttcagcagcttttgcagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgataccctctc |
11797864 |
T |
|
| Q |
222 |
tgc |
224 |
Q |
| |
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||| |
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|
| T |
11797863 |
tgc |
11797861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 11676126 - 11675924
Alignment:
| Q |
22 |
atatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcagcagttccagccc |
121 |
Q |
| |
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||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| || || |||||||||| |||| |||||||| |
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| T |
11676126 |
atataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactccagccc |
11676027 |
T |
|
| Q |
122 |
aaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgatgccctctc |
221 |
Q |
| |
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||||||| ||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |
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| T |
11676026 |
aaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaagttcccttgaatcccataatatgataccctctc |
11675927 |
T |
|
| Q |
222 |
tgc |
224 |
Q |
| |
|
||| |
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|
| T |
11675926 |
tgc |
11675924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 11684405 - 11684203
Alignment:
| Q |
22 |
atatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcagcagttccagccc |
121 |
Q |
| |
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||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| || || |||||||||| |||| |||||||| |
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| T |
11684405 |
atataaatgagagaagcgagtatgattgtgcgatagcgtccaagaaaagaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactccagccc |
11684306 |
T |
|
| Q |
122 |
aaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaaattcccttgaattccataatatgatgccctctc |
221 |
Q |
| |
|
||||||| ||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |
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| T |
11684305 |
aaatattcacattctcagcagcagttgcagtgctttgtttgagtggtcctgttagatatgatatcaagttcccttgaatcccataatatgataccctctc |
11684206 |
T |
|
| Q |
222 |
tgc |
224 |
Q |
| |
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||| |
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|
| T |
11684205 |
tgc |
11684203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 11779204 - 11779035
Alignment:
| Q |
19 |
aatatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcagcagttccag |
118 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||| || || |||||||||| ||||||||||| |
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|
| T |
11779204 |
aatacatagataagagaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaatgaatgcaccaaagagaggaaggagagaagcagttccag |
11779105 |
T |
|
| Q |
119 |
cccaaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaa |
188 |
Q |
| |
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|||||| ||| |||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
11779104 |
cccaaacattcacattcttagcagcagttgcagtgctttgtttgagtggccctgttagatatgatatcaa |
11779035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 16667 - 16498
Alignment:
| Q |
19 |
aatatatagatgagagaagcaagtatgattgtgcggtagcgtccaagaaaagaatcagcnnnnnnngcacctaacaggggaaggagagcagcagttccag |
118 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| |||||||| || ||||| |||| ||||||||||| |
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| T |
16667 |
aatatatagataagagaagcaagtatgattgtgtgatagcgtccaagaaaagaatcagcaacgaaagcacctaagagaggaagtagagaagcagttccag |
16568 |
T |
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| Q |
119 |
cccaaatattgacattcttagcagctgttacagtgctttgtttgagtggtcctgttagatatgatatcaa |
188 |
Q |
| |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
16567 |
cccaaatattcacattcttagcagctgttgcagtgctttgtttgagtggtcctgttagatatgatatcaa |
16498 |
T |
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