View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11622_low_6 (Length: 519)
Name: NF11622_low_6
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 232 - 509
Target Start/End: Complemental strand, 41675516 - 41675239
Alignment:
| Q |
232 |
tgtccaagatgcaacaatacatgtgaaatctaaacaatgaatccatgcaatattgcaatagacatgttcttctctagcctatgctaattatctccatgtt |
331 |
Q |
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| T |
41675516 |
tgtccaagatgcaacaatacatgtgaaatctaaacaatgaatccatgcaatattgcaatagacatgttcttctctagcctatgctaattatctccatgtt |
41675417 |
T |
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| Q |
332 |
tatgccaacaaactaacatggcaacacaccttctcattatgtaaaatcttgctttctgttccttagctaaattggtgcattttcgacctattgaagaagg |
431 |
Q |
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| T |
41675416 |
tatgccaacaaactaacatggcaacacaccttctcattatgtaaaatcttgctttctgttccttagctaaattggtgcattttcgacctattgaagaagg |
41675317 |
T |
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| Q |
432 |
gtttttctgtgagaagcttctttgaagattgcatttggaggaagaagaagaactccttaggagtgaagagtttgaagt |
509 |
Q |
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| T |
41675316 |
gtttttctgtgagaagcttctttgaagattgcatttggaggaagaagaagaactccttaggagtgaagagtttgaagt |
41675239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 41675737 - 41675583
Alignment:
| Q |
11 |
cacagagagcaaaacagaactatatgtatatgcaacatatataatcaaacatagaatatgataaatattaatctgaagtttacttggatgtgtatataat |
110 |
Q |
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| T |
41675737 |
cacagagagcaaaacagaactatatgtatatgcaacatatataatcaaacatagaatatgataaatattaatctgaagtttacttggatgtgtatataat |
41675638 |
T |
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| Q |
111 |
ttttcaccaatgtataaatctaataactcactttagttaactcttaattacaatc |
165 |
Q |
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| T |
41675637 |
ttttcaccaatgtataaatctaataactcactttagttaactcttaattacaatc |
41675583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 321 - 413
Target Start/End: Complemental strand, 24067216 - 24067124
Alignment:
| Q |
321 |
atctccatgtttatgccaacaaactaacatggcaacacaccttctcattatgtaaaatcttgctttctgttccttagctaaattggtgcattt |
413 |
Q |
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| T |
24067216 |
atctccatgtttgtgccaacaaactaacatggctacgcatctcctcatgatgtaaaatcttgctttctgttctttggctatattggtgcattt |
24067124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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