View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11622_low_8 (Length: 508)
Name: NF11622_low_8
Description: NF11622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11622_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Complemental strand, 33102495 - 33102005
Alignment:
| Q |
1 |
ttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataatagaagcagcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33102495 |
ttaccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataatagaagcagcag |
33102396 |
T |
|
| Q |
101 |
tttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaagaaccacaacttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33102395 |
tttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaagaaccacaacttg |
33102296 |
T |
|
| Q |
201 |
aaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaaagagagaagattgtgatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33102295 |
aaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaaagagagaagattgtgatc |
33102196 |
T |
|
| Q |
301 |
atccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcagctgcgatgaacctatagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33102195 |
atccactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcagctgcgatgaacctatagt |
33102096 |
T |
|
| Q |
401 |
tcatggcataagggttatttgtggagatgaaatgaaaggatagaagaggaactgcgaaaatcgcgacgaaacggtttatgccggaacattg |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33102095 |
tcatggcataagggttatttgtggagatgaaatgaaaggatagaagaggaactgcgaaaatcgcgacgaaacggtttatgccggaacattg |
33102005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 51 - 260
Target Start/End: Complemental strand, 52716731 - 52716522
Alignment:
| Q |
51 |
aagagaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaa |
150 |
Q |
| |
|
|||||||||||| ||||||||||| || || || | |||||||| |||||||||||||||||||| | || ||||| |||||| | | ||| ||||| |
|
|
| T |
52716731 |
aagagaaacaacgtcagaatcaactttgaatgatgttatagaagctgcagtttcaggaaactgttctgttataagaagtttagcagctctatattcaaac |
52716632 |
T |
|
| Q |
151 |
agaaacaataacaaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaa |
250 |
Q |
| |
|
| |||||| | | |||||||||||| | || |||||||| |||| ||| |||||||| | || || | ||||||||||||||| | | ||| || | |
|
|
| T |
52716631 |
aaaaacaacataagagtgtaccaaataacactttgaagaacaacaatttgtaccataagatttcctgagaaatcaccatacatagctcttaaaagaggga |
52716532 |
T |
|
| Q |
251 |
ttcccataac |
260 |
Q |
| |
|
|||||||||| |
|
|
| T |
52716531 |
ttcccataac |
52716522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 52711419 - 52711358
Alignment:
| Q |
55 |
gaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttc |
116 |
Q |
| |
|
|||||||||||||||||||| || || || | |||||||| |||||||| ||||||||||| |
|
|
| T |
52711419 |
gaaacaacatcagaatcaactttgaatgatgttatagaagctgcagtttctggaaactgttc |
52711358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 9e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 4 - 493
Target Start/End: Original strand, 10838590 - 10839079
Alignment:
| Q |
4 |
ccatcatcaccaacctcagcatctgtctcaagaaaatctctcccatcaagagaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagttt |
103 |
Q |
| |
|
|||||||||||||| ||||| || |||||||||||||| ||||| | || | ||| || ||||| ||||||||||||| || ||||| || |||| |
|
|
| T |
10838590 |
ccatcatcaccaactgatgcatcagtttcaagaaaatctcttccatctaacgacataacgtccgaatcgaccttaaaggaaacgatggaagccgcggttt |
10838689 |
T |
|
| Q |
104 |
caggaaactgttccataattagaagcttagcaccacgatactcaaaaagaaacaataacaaagtgtaccaaatgatacactgaagaaccacaacttgaac |
203 |
Q |
| |
|
| |||||||| ||||| |||| ||||||||||||||| |||||||||||||| | || | |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10838690 |
ctggaaactgctccatgattaaaagcttagcaccacggtactcaaaaagaaaaagcaaaagagtgtaccaaataatacactgaagaaccacaacttgaac |
10838789 |
T |
|
| Q |
204 |
cataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataaccaaagtgttgggtaatgttgaaagagagaagattgtgatcatc |
303 |
Q |
| |
|
||| | | |||| ||||| |||||||||||||| || | | ||||||||||||||||||||||| || | |||||| | || |||||||| |||||| |
|
|
| T |
10838790 |
cattaagctacctgaataatcaccatacatagcaattaacaaaggaattcccataaccaaagtgttaggaagtgttgataatgaaaagattgttatcatc |
10838889 |
T |
|
| Q |
304 |
cactctaagctaccattagctgtgaaattagtccaaattgtaagtgcaaggagcatgatgattttttgaagtgtatcagctgcgatgaacctatagttca |
403 |
Q |
| |
|
|| ||||| | ||||| ||||| ||||| | || |||||| | ||||||||||||||||||||||| || || || |||||||| |||||| |
|
|
| T |
10838890 |
cattctaaattgccatttttagtgaacaatgtccataatgaaagtgctactagcatgatgattttttgaagtgtgtctgcagctatgaacctgaagttca |
10838989 |
T |
|
| Q |
404 |
tggcataagggttatttgtggagatgaaatgaaaggatagaagaggaactgcgaaaatcgcgacgaaacggtttatgccggaacattgat |
493 |
Q |
| |
|
| || || ||||| || |||||||| || ||||| || ||||| || ||||||| |||||| ||||||||||| ||||||||||||| |
|
|
| T |
10838990 |
tttggtatggattattggttgagatgaagtggaaggaaaggagaggtacggcgaaaaccgcgacaaaacggtttataccggaacattgat |
10839079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 493
Target Start/End: Original strand, 9970350 - 9970416
Alignment:
| Q |
427 |
atgaaatgaaaggatagaagaggaactgcgaaaatcgcgacgaaacggtttatgccggaacattgat |
493 |
Q |
| |
|
||||| ||||| ||||||| ||||| || |||| |||||||| |||||||||||||||||||||| |
|
|
| T |
9970350 |
atgaagtgaaaagatagaactggaacagcaaaaactgcgacgaatcggtttatgccggaacattgat |
9970416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 54 - 233
Target Start/End: Complemental strand, 34971234 - 34971055
Alignment:
| Q |
54 |
agaaacaacatcagaatcaaccttaaaggaaataatagaagcagcagtttcaggaaactgttccataattagaagcttagcaccacgatactcaaaaaga |
153 |
Q |
| |
|
||||| ||||||||||||||| || || || ||||||||| ||||||| |||||||||||||| | ||| |||| | ||||||| | ||||||||| | | |
|
|
| T |
34971234 |
agaaagaacatcagaatcaactttgaatgatataatagaaccagcagtatcaggaaactgttcaacaatgagaatcctagcacccctatactcaaacaaa |
34971135 |
T |
|
| Q |
154 |
aacaataacaaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacat |
233 |
Q |
| |
|
||||| | ||| || |||||||||||||| |||||||| || | |||||||||||||||||| |||| ||||||||||| |
|
|
| T |
34971134 |
aacaacatcaatgtataccaaatgatacattgaagaacaactatttgaaccataagggtaccagaatcatcaccatacat |
34971055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 493
Target Start/End: Complemental strand, 34970923 - 34970795
Alignment:
| Q |
365 |
ttttttgaagtgtatcagctgcgatgaacctatagttcatggcataagggttatttgtggagatgaaatgaaaggatagaagaggaactgcgaaaatcgc |
464 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| |||||||| | ||||| || || || |||||||| || || || ||||| |||||||| |||| || |
|
|
| T |
34970923 |
ttttttgaagtgaatcagctgctatgaacctgtagttcatagtgtaaggattgttggttgagatgaagtggaatgagagaagtggaactgcaaaaagtgc |
34970824 |
T |
|
| Q |
465 |
gacgaaacggtttatgccggaacattgat |
493 |
Q |
| |
|
|| |||||||||||||| |||||||||| |
|
|
| T |
34970823 |
tacaaaacggtttatgcctgaacattgat |
34970795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 269
Target Start/End: Complemental strand, 25038959 - 25038852
Alignment:
| Q |
162 |
caaagtgtaccaaatgatacactgaagaaccacaacttgaaccataagggtaccggaatattcaccatacatagctatgagaagtggaattcccataacc |
261 |
Q |
| |
|
|||||| |||||||||||||| |||||||| |||| ||| ||||| | |||| ||| ||||||||||||| || | || | ||||||||||||||| |
|
|
| T |
25038959 |
caaagtataccaaatgatacattgaagaacaacaatttgtaccattaaactacctgaaaattcaccatacattcctttaagtaaaggaattcccataacc |
25038860 |
T |
|
| Q |
262 |
aaagtgtt |
269 |
Q |
| |
|
|||||||| |
|
|
| T |
25038859 |
aaagtgtt |
25038852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University