View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11623_high_1 (Length: 569)
Name: NF11623_high_1
Description: NF11623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11623_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Complemental strand, 32396877 - 32396321
Alignment:
| Q |
1 |
ggatatataacttcaataagttagtata-atcttgatgaagctggtgaattgagtttgtcgggacaaaatttgattttgtagtggtttatattaggatag |
99 |
Q |
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| T |
32396877 |
ggatacataacttcaataagttagtatatatcttgatgaagctggtgaattgagtttgtcgggacaaaatttgattttgtagtggtttatattaggatag |
32396778 |
T |
|
| Q |
100 |
attcatgtaaaaatgaattgaacaatgaattcgagggtgaaaatcatttatagaagcaaaagttataaattttagcttcttgagttagaatcaattcaag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32396777 |
attcatgtaaaaatgaattgaacaatgaattcgagggtgaaaatcatttatagaagcaaaagttataaattttagcttcttgagttagaatcaattcacg |
32396678 |
T |
|
| Q |
200 |
aggtagaatcaattatacacctccgaaaaatttgcctcgtgcgtaagtgaaaccgaatatacacatgataatgtctatagccaaaccattgatcttatat |
299 |
Q |
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| T |
32396677 |
aggtagaatcaattatacacctccgaaaaatttgcctcgtgcgaaagtgaaaccaaatatacacataataatgtctatagccaaaccattgatcttatat |
32396578 |
T |
|
| Q |
300 |
gttttaatagttttgccaataatttataggtggggtaaaaaagcaagtaaatttttcaaggcagttgtaccatttctaatcaaacttaggcttgaaggtg |
399 |
Q |
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| T |
32396577 |
gttttaatagttttgccaataattaataggtggggtaaaaaagcaagtaaatttttcaaggcagttgtaccatttctaatcaaacttaggcttgaaggtg |
32396478 |
T |
|
| Q |
400 |
gccatataaattgctaatcctgaaattttctatcatattaaagtaaggcttggaggcaaaacaaattttgccatacaacaatcaaatacatgtaaaatta |
499 |
Q |
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| T |
32396477 |
gccatataaattgctaatcctgaaattttctatcatattaaagtaaggcttggaggcaaaacaaattttgccatacaacaatcaaatacatgtaaaatta |
32396378 |
T |
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| Q |
500 |
tatttgtagaaagtaaaatcaatttgtaaaaccaagcacacccctatttttccctct |
556 |
Q |
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| T |
32396377 |
tatttgtagaaagtaaaatcaatttgtaaaaccaagcacacccctattttcccctct |
32396321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 213
Target Start/End: Complemental strand, 18597150 - 18597019
Alignment:
| Q |
80 |
agtggtttatattaggatagattcatgtaaaaatgaattgaacaatgaattcgagggtgaaaatcatttatagaagcaaaagttataaattttagcttct |
179 |
Q |
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||||||||||||| ||||| ||| |||||| |||||| |||||| | || || || ||||||| |||||||| |||||| | ||||| ||||||| |
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| T |
18597150 |
agtggtttatatttggataagttcgagtaaaagtgaatttaacaataactttgaatgttaaaatcaattatagaatcaaaaggttcaaattatagcttc- |
18597052 |
T |
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| Q |
180 |
tgagttagaatcaattcaagaggtagaatcaatt |
213 |
Q |
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| T |
18597051 |
-aagttagaatcaattctggaggtaaaatcaatt |
18597019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 37335029 - 37335090
Alignment:
| Q |
100 |
attcatgtaaaaatgaattgaacaatgaattcgagggtgaaaatcatttatagaagcaaaag |
161 |
Q |
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| T |
37335029 |
attcatataaaaatgagttgaacaatgaattcaagtgtaaaaatcaattctagaatcaaaag |
37335090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 160
Target Start/End: Complemental strand, 40339336 - 40339257
Alignment:
| Q |
80 |
agtggtttatattaggatagattcatgtaaaaatgaattgaacaatgaattcgagggtgaaaatcatttatagaagcaaaa |
160 |
Q |
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| T |
40339336 |
agtggtttatgtttggatatatttaggtaaaagtgaattgaacaataaattcaaggct-aaaatcaattgtagaagcaaaa |
40339257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 196
Target Start/End: Complemental strand, 44439340 - 44439250
Alignment:
| Q |
104 |
atgtaaaaatgaattgaacaatgaattcgagggtgaaaatcatttatagaagcaaaagttataaattttagcttcttgagttagaatcaattc |
196 |
Q |
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|||||||| ||| ||||||||| |||| ||| || ||||||| || ||||| |||||| | ||||||||||||| ||||||||||||||| |
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| T |
44439340 |
atgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaaattttagcttc--aagttagaatcaattc |
44439250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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