View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11623_high_12 (Length: 238)

Name: NF11623_high_12
Description: NF11623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11623_high_12
NF11623_high_12
[»] chr2 (3 HSPs)
chr2 (9-224)||(34241241-34241456)
chr2 (9-174)||(34251053-34251218)
chr2 (1-167)||(34315465-34315631)
[»] chr8 (1 HSPs)
chr8 (5-42)||(17107420-17107457)


Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 224
Target Start/End: Complemental strand, 34241456 - 34241241
Alignment:
Q  9 ttcaacttatgacacatcactgctttgtctccaagattttgcaccgattctattttgtattgttcatgtttatcaatgaaggaacttgaaagtgatagaa 108  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34241456 ttcaacctatgacacatcactgctttgtctccaagattttgcaccgattctattttgtattgttcatgtttatcaatgaaggaacttgaaagtgattgaa 34241357  T
Q  109 tattttttccaagttttgaaattgcaaatccaattaatgttcctaaggattttgcacaaaatttttcttcaaccttcttgggtttattctttacacacat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34241356 tattttttccaagttttgaaattgcaaatccaattaatgttcctaaggattttgcacaaaatttttcttcaaccttcttgggtttattctttacacacat 34241257  T
Q  209 ctcatcaatagtatat 224  Q
    ||||||||||||||||    
T  34241256 ctcatcaatagtatat 34241241  T

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Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 34251218 - 34251053
Alignment:
Q  9 ttcaacttatgacacatcactgctttgtctccaagattttgcaccgattctattttgtattgttcatgtttatcaatgaaggaacttgaaagtgatagaa 108  Q
    |||||| ||||||||||||||||||| |||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  34251218 ttcaacctatgacacatcactgctttctctccaagattttgaactgactctattttgtattgttcatgtttatcaatgaaggaacttgaaagtgcttgaa 34251119  T
Q  109 tattttttccaagttttgaaattgcaaatccaattaatgttcctaaggattttgcacaaaattttt 174  Q
    ||||||||||||| || ||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  34251118 tattttttccaagcttagaaattgaaaatccgattaatgttcctaaggattttgcacaaaattttt 34251053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 34315631 - 34315465
Alignment:
Q  1 tttggaaattcaacttatgacacatcactgctttgtctccaagattttgcaccgattctattttgtattgttcatgtttatcaatgaaggaacttgaaag 100  Q
    |||||||||||||| | |||||||||||  |||| |||||||||||||| || || ||||   |||||||||| || ||||| || ||||||||||||||    
T  34315631 tttggaaattcaacctgtgacacatcacccctttatctccaagattttgtacagactctacagtgtattgttcttgattatctattaaggaacttgaaag 34315532  T
Q  101 tgatagaatattttttccaagttttgaaattgcaaatccaattaatgttcctaaggattttgcacaa 167  Q
    || | |||| || |||||||| |||||||| |||||  ||||||||| ||| || ||||| ||||||    
T  34315531 tgcttgaatgttgtttccaagctttgaaatggcaaactcaattaatgatcccaaagatttagcacaa 34315465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 17107457 - 17107420
Alignment:
Q  5 gaaattcaacttatgacacatcactgctttgtctccaa 42  Q
    |||||||||  |||||||||||||||||||||||||||    
T  17107457 gaaattcaatctatgacacatcactgctttgtctccaa 17107420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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