View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11623_high_2 (Length: 529)

Name: NF11623_high_2
Description: NF11623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11623_high_2
NF11623_high_2
[»] chr1 (3 HSPs)
chr1 (49-516)||(2928709-2929177)
chr1 (51-516)||(2309867-2310326)
chr1 (10-53)||(2928655-2928698)
[»] chr6 (1 HSPs)
chr6 (206-248)||(21959878-21959920)
[»] chr3 (1 HSPs)
chr3 (206-248)||(904847-904889)


Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 49 - 516
Target Start/End: Original strand, 2928709 - 2929177
Alignment:
Q  49 ataattttttacaaaaacatcacaaccgcaattgactacatttacctgcattttagtataatgtcaagagtcacgatgaatccgcaatcgcggccacaat 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  2928709 ataattttttacaaaaacatcacaaccgcaattgactacatttacctgcattttagtataatgtcaagagtcacaatgaattcgcaatcgcggccacaat 2928808  T
Q  149 ttaaaaccaggtagtagtttactataaaaacaaagagttagacaaaacaaa-gtcataaaatacctcatgtgcaattatagttgctttctctgcatcact 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2928809 ttaaaaccaggtagtagtttactataaaaacaaagagttagacaaaacaaaagtcataaaatacctcatgtgcaattatagttgctttctctgcatcact 2928908  T
Q  248 tggaaaatgcctaatcaaatcccagcttagaactatcttcccattgggaaaacatccgacagacatattagttnnnnnnnctaccaaaacctcccaattt 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  2928909 tggaaaatgcctaatcaaatcccagcttagaactatcttcccattgggaaaacatccgacagacatattagttaaaaaaactaccaaaacctcccaattt 2929008  T
Q  348 aatccatccaaatgtgaaatggtacactcagattcatggctcattttgtttctctctctcagcaatgcatcaataatattgttgagaatctttgtaagcc 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2929009 aatccatccaaatgtgaaatggtacactcagattcatggctcattttgtttctctctctcagcaatgcatcaataatattattgagaatctttgtaagcc 2929108  T
Q  448 ttacactttcttgatgggttggaggcattgtacgtccttcaaacctttgtttgtattcttcaaagccct 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2929109 ttacactttcttgatgggttggaggcattgtacgtccttcaaacctttgtttgtattcttcaaagccct 2929177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 51 - 516
Target Start/End: Complemental strand, 2310326 - 2309867
Alignment:
Q  51 aattttttacaaaaacatcacaaccgcaattgactacatttacctgcattttagtataatgtcaagagtcacgatgaatccgcaatcgcggccacaattt 150  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| |||| |||||||| || |||||||||||||||||||| ||||||    
T  2310326 aattttctacaaaaacgtcacaaccgcaattgactacatttacctgaattttagtgtaatatcaagagttacaatgaatccgcaatcgcggccgcaattt 2310227  T
Q  151 aaaaccaggtagtagtttactataaaaacaaagagttagacaaaacaaagtcataaaatacctcatgtgcaattatagttgctttctctgcatcacttgg 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||  |||||||||||||||||||||||    
T  2310226 aaaaccaggtagtagtttactataaaaacaaagagttagacaaaacaaaatcataaaatacctcacgtgcaattaaggttgctttctctgcatcacttgg 2310127  T
Q  251 aaaatgcctaatcaaatcccagcttagaactatcttcccattgggaaaacatccgacagacatattagttnnnnnnnctaccaaaacctcccaatttaat 350  Q
    |||| || ||| |||||||||||||||| ||||||||||||| | |||||||  | |||| |||| || |       |||||| ||||||||||||||||    
T  2310126 aaaaggcttaaccaaatcccagcttagacctatcttcccattagcaaaacatgtgccagatatataaggtaaaaaaactaccacaacctcccaatttaat 2310027  T
Q  351 ccatccaaatgtgaaatggtacactcagattcatggctcattttgtttctctctctcagcaatgcatcaataatattgttgagaatctttgtaagcctta 450  Q
    |||||||||||||| ||       | ||||||| |||||||||| ||||| |||||  ||||||||||||| ||||| ||||||||||||||| ||||||    
T  2310026 ccatccaaatgtgacat------attagattcagggctcattttctttctttctctttgcaatgcatcaattatattattgagaatctttgtatgcctta 2309933  T
Q  451 cactttcttgatgggttggaggcattgtacgtccttcaaacctttgtttgtattcttcaaagccct 516  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2309932 cactttcttgataggtttgaggcattgtacgtccttcaaacctttgtttgtattcttcaaagccct 2309867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 53
Target Start/End: Original strand, 2928655 - 2928698
Alignment:
Q  10 cctagagttaaattacggtccacaactgcaagtgcggtcataat 53  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  2928655 cctagaattaaattacggtccacaactgcaagtgcggtcataat 2928698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 21959878 - 21959920
Alignment:
Q  206 aaatacctcatgtgcaattatagttgctttctctgcatcactt 248  Q
    ||||||||||||| |||| ||||||||| ||||||||||||||    
T  21959878 aaatacctcatgtccaataatagttgctatctctgcatcactt 21959920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 248
Target Start/End: Complemental strand, 904889 - 904847
Alignment:
Q  206 aaatacctcatgtgcaattatagttgctttctctgcatcactt 248  Q
    ||||||||||||| |||| ||||||||| ||||||||||||||    
T  904889 aaatacctcatgtccaataatagttgctatctctgcatcactt 904847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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