View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11623_high_3 (Length: 457)
Name: NF11623_high_3
Description: NF11623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11623_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 170; Significance: 5e-91; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 220 - 453
Target Start/End: Original strand, 52092466 - 52092698
Alignment:
| Q |
220 |
tgaagattgaaatgttgtgatggagataacatttcaaataactgttttatcactttcagaatactagaaaacaaggcatccatggtttcaataaaggttt |
319 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
52092466 |
tgaagattgaaatgttgtgatgaagataacatttcaaataactgttttatcactttcagaatactagaaaacaaggcatccatgg-ttcaataaaggttt |
52092564 |
T |
|
| Q |
320 |
ccacttgtcgtcactaggnnnnnnnntgagagggagccataatc----tttctcaatgatgaccttgaaaataccatcatcgtccagaaattaacatcaa |
415 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52092565 |
ccacttgtcgtcacta----caaaaatgagagggagccataatcttaatttctcaatgatgaccttgaaaataccatcatcgtccagaaattaacatcaa |
52092660 |
T |
|
| Q |
416 |
cacacacctcacgacaacctcgtatattcatctctctc |
453 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
52092661 |
cacacacctcacgacaacctcgtatatttatctctctc |
52092698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 52092262 - 52092437
Alignment:
| Q |
16 |
tttatcacatgaattctatctccacaaacaagatacttaatgggtttcctttacttctaatcaatcaataataatcaccaaaaccagaaagtgtgatatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52092262 |
tttatcacatgaattctatctccacaaacaagatacttaatgggtttcctttacttctaatcaatcaataataatcaccaaaaccagaaagtgtgatatt |
52092361 |
T |
|
| Q |
116 |
gttcttggagttggccttgtaaatgttagnnnnnnntcatcatcaaccaaactacaattctttaatatatgtcatg |
191 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52092362 |
gttcttggagttggccttgtaaatgttagaaaaaaatcatcatcaaccaaactacaattctttaatatatgtcatg |
52092437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 222 - 422
Target Start/End: Original strand, 52082272 - 52082470
Alignment:
| Q |
222 |
aagattgaaatgttgtgatggagataacatttcaaataactgttttatcactttcagaatactagaaaacaaggcatccatggtttcaataaaggtttcc |
321 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
52082272 |
aagattgaaatgttgtgatgaagataacatttcaaataatagttttatcactttcagaatactagaaaacaaggcatccaagg-ttcaataaaggtttcc |
52082370 |
T |
|
| Q |
322 |
acttgtcgtcactaggnnnnnnnntgagagggagccataatctttctcaatgatgaccttgaaaataccatcatcgtccagaaattaacatcaacacaca |
421 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||| |||||||| | ||||||||||||||||| |||||| |
|
|
| T |
52082371 |
acttgtcgtcactagg-acaaaaatgagagggagccataatttttctcaatgatgaccttaaaattaccatcaccatccagaaattaacatcagcacaca |
52082469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 52082105 - 52082190
Alignment:
| Q |
59 |
gtttcctttacttctaatcaatcaataataatcaccaaaaccagaaagtgtgatattgttcttggagttggccttgtaaatgttag |
144 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||| ||| |||||||||||||||| | ||||||||||||||| |
|
|
| T |
52082105 |
gtttcctttacttctaatcaatcaataataatcaccatacccagaatgtgcgatattgttcttggagattaccttgtaaatgttag |
52082190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 52082040 - 52082082
Alignment:
| Q |
16 |
tttatcacatgaattctatctccacaaacaagatacttaatgg |
58 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
52082040 |
tttatcacatgaatgctatctccacaaacaagatacttaatgg |
52082082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University