View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11623_high_8 (Length: 266)

Name: NF11623_high_8
Description: NF11623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11623_high_8
NF11623_high_8
[»] chr2 (3 HSPs)
chr2 (1-256)||(34241446-34241701)
chr2 (1-256)||(34251208-34251463)
chr2 (6-156)||(34315618-34315768)


Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 34241446 - 34241701
Alignment:
Q  1 cataagttgaatttccaaaaggttgtattttattgtcatgaagttcatggaacaacagcttttaaggttccattggtggctaatgatggaacaaaaactc 100  Q
    |||| |||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34241446 cataggttgaactttcaaaaagttgtattttattgtcatgaagttcatggaacaacagcttttaaggttccattggtggctaatgatggaacaaaaactc 34241545  T
Q  101 atgcaatagctacttgccatgctgatacttcaggcatgaatcaacatatgcttcatcagattatgaaaggtgatcctggtagtaaccctgtttgtcattt 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34241546 atgcaatagctacttgccatgctgatatttcaggcatgaatcaacatatgcttcatcagattatgaaaggtgatcctggtagtaaccatgtttgtcattt 34241645  T
Q  201 ccttggaaataaggctattttatgggtacctaatttaggtttggacaatgcctatg 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34241646 ccttggaaataaggctattttatgggtacctaatttaggtttggacaatgcctatg 34241701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 34251208 - 34251463
Alignment:
Q  1 cataagttgaatttccaaaaggttgtattttattgtcatgaagttcatggaacaacagcttttaaggttccattggtggctaatgatggaacaaaaactc 100  Q
    |||| |||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  34251208 cataggttgaactttcaaaaggttgtattttattgtcatgaaattcatggaacaacagcttttatggttccattggtggctaatgatggaagaaaaactc 34251307  T
Q  101 atgcaatagctacttgccatgctgatacttcaggcatgaatcaacatatgcttcatcagattatgaaaggtgatcctggtagtaaccctgtttgtcattt 200  Q
    | ||| |||||  ||| ||| ||||||||||||||||||||||  | ||||| || ||||||||||||| ||||||||||||||| ||||| || |||||    
T  34251308 aggcactagctgtttgtcatactgatacttcaggcatgaatcatgaaatgctgcaacagattatgaaagctgatcctggtagtaaacctgtgtgccattt 34251407  T
Q  201 ccttggaaataaggctattttatgggtacctaatttaggtttggacaatgcctatg 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34251408 ccttggaaataaggctattttatgggtacctaatttaggtttggacaatgcctatg 34251463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 156
Target Start/End: Original strand, 34315618 - 34315768
Alignment:
Q  6 gttgaatttccaaaaggttgtattttattgtcatgaagttcatggaacaacagcttttaaggttccattggtggctaatgatggaacaaaaactcatgca 105  Q
    ||||||||||||||||||||||| ||||||||||  | ||| || ||| |||||||| | |||||| ||||||||   ||||||||| |||||||| |||    
T  34315618 gttgaatttccaaaaggttgtatattattgtcatagaattcgtgcaaccacagctttcatggttccgttggtggccggtgatggaaccaaaactcaagca 34315717  T
Q  106 atagctacttgccatgctgatacttcaggcatgaatcaacatatgcttcat 156  Q
    ||||||  |||||||||||||||||| || ||||||||||| |||||||||    
T  34315718 atagctgtttgccatgctgatacttctggtatgaatcaacagatgcttcat 34315768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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